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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG243200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 259aa MW: 28300.9 Da PI: 6.3122 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 45.2 | 3e-14 | 111 | 198 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle.....leH 85 +fY eYA+ vGFs+++ +s + ++++C eg++ + kk++ + r++ + tgCka lk+++ ++k ev ++ l+H Pavir.1KG243200.1.p 111 DFYLEYARAVGFSIKRYRSDGN-------IKWLNCRSEGTNPGKAKKEDAKGRKTGTVMTGCKAGLKLRQIVNEKKEVVAVHivlanLDH 193 6*************99876665.......689************99999999999***************99888777777666777*** PP FAR1 86 nHela 90 nH++ Pavir.1KG243200.1.p 194 NHKFL 198 **985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-8 | 111 | 198 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEPTAGIESG VQTPAARLGS VDSSVHETRA TSTPTAGRGE VTETMVTPPA ELRAPGNQPA 60 CAGVVGDAAT RTVSEEEMDT PEIFQRHADS IEPSLVPRVG MEFRCLDDCY DFYLEYARAV 120 GFSIKRYRSD GNIKWLNCRS EGTNPGKAKK EDAKGRKTGT VMTGCKAGLK LRQIVNEKKE 180 VVAVHIVLAN LDHNHKFLTE KEAAKHFYSH KQVESPLLDF VGAMQDSRVP EHCIIDIVSD 240 MNGGPENNPM TRQDLKNM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG243200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Pavir.Ab01669.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7609 | 10 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 3e-10 | FAR1-related sequence 8 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG243200.1.p |