PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG240600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 400aa    MW: 43593.8 Da    PI: 6.8597
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG240600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05218237120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          + C+ C+k+Fsr  n++ H+
  Pavir.1KG240600.2.p 218 FICQVCSKTFSRYNNMQMHM 237
                          89*****************9 PP
2zf-C2H212.20.00056304326123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C  Cgk+F  k + ++H +++
  Pavir.1KG240600.2.p 304 FGCRRCGKPFAVKGDWRTHEKNC 326
                          56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-5209241No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5218237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.45218245IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
SuperFamilySSF576676.29E-5288324No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MVLRACAMEG AAADRFVGVP YYEWLKPRSS SPSSSSSTSS TLSTPSSSSA DHSAADGQER  60
DAMMCLPLLG RLEGRATTPD RGPVPVKQEE LAMSDITAAT TTGGAAGGAV IDLNIGLPAI  120
GGYSSEEAPM GEEDEDEEED YEEEEEEEKP RKHDKCKEEE AGDHHANSTE MAVESVEGAE  180
PDYLRVDGED GVRGFMDSRG RRFWIPTPAQ ILVGPVQFIC QVCSKTFSRY NNMQMHMWGH  240
GREYRKGPES LKGTQAATLA LLKLPCYCCA AGCRNSVAHP RARPLKDFRT LQTHYKRKHG  300
DKRFGCRRCG KPFAVKGDWR THEKNCGKRW FCACGSDFKH KRSLNDHVRS FGGGHLPVAP  360
DQQAAAAAVP PLKPKERIIR FDQAAAAPAP WNGAHAAQA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.50040.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG240600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026581e-172AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804775.10.0protein TRANSPARENT TESTA 1-like
TrEMBLA0A2S3HBL40.0A0A2S3HBL4_9POAL; Uncharacterized protein
STRINGPavir.J02061.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-90WIP domain protein 5