PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG240600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 416aa MW: 45589.2 Da PI: 7.3295 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.5e-05 | 218 | 237 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+Fsr n++ H+ Pavir.1KG240600.1.p 218 FICQVCSKTFSRYNNMQMHM 237 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00059 | 304 | 326 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F k + ++H +++ Pavir.1KG240600.1.p 304 FGCRRCGKPFAVKGDWRTHEKNC 326 56*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.85E-5 | 209 | 241 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 218 | 237 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.45 | 218 | 245 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 220 | 240 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.71E-5 | 288 | 324 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MVLRACAMEG AAADRFVGVP YYEWLKPRSS SPSSSSSTSS TLSTPSSSSA DHSAADGQER 60 DAMMCLPLLG RLEGRATTPD RGPVPVKQEE LAMSDITAAT TTGGAAGGAV IDLNIGLPAI 120 GGYSSEEAPM GEEDEDEEED YEEEEEEEKP RKHDKCKEEE AGDHHANSTE MAVESVEGAE 180 PDYLRVDGED GVRGFMDSRG RRFWIPTPAQ ILVGPVQFIC QVCSKTFSRY NNMQMHMWGH 240 GREYRKGPES LKGTQAATLA LLKLPCYCCA AGCRNSVAHP RARPLKDFRT LQTHYKRKHG 300 DKRFGCRRCG KPFAVKGDWR THEKNCGKRW FCACGSDFKH KRSLNDHVRS FGGGHLPVAP 360 DQQAAAAAVP PLKPKERIIR FDQAAAAPAP WNGAHAAQDY AYILLPARRR GVHRQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5004 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG240600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102658 | 1e-172 | AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804775.1 | 0.0 | protein TRANSPARENT TESTA 1-like | ||||
TrEMBL | A0A2S3HBL4 | 0.0 | A0A2S3HBL4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J02061.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4472 | 36 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 2e-90 | WIP domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG240600.1.p |