PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG214800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 207aa MW: 23250.7 Da PI: 11.0026 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.5 | 2.5e-19 | 12 | 137 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......................................tekerr 53 Yn+YA +vGF +r+ +s+ks+ ++++++++f C+ k++e + + t+ +r+ Pavir.1KG214800.1.p 12 VYNDYAFKVGFGTRVGSSRKSNVTKQVIRKEFECTHARKPAECEGSgsaatndlatantskkrrpladpatansskkkrpssmlTTASRK 101 7*****************************************99999*************************************99**** PP FAR1 54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 r+ ++ +Cka++ + ++ +gkw v +++eH+H+l+ Pavir.1KG214800.1.p 102 CRTIKKFECKAHMAIGLR-NGKWGVVVFQQEHTHPLV 137 ******************.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-16 | 12 | 137 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MEFDTIEEAA KVYNDYAFKV GFGTRVGSSR KSNVTKQVIR KEFECTHARK PAECEGSGSA 60 ATNDLATANT SKKRRPLADP ATANSSKKKR PSSMLTTASR KCRTIKKFEC KAHMAIGLRN 120 GKWGVVVFQQ EHTHPLVKMI GRRKHLRSHR HISWADYELL KTLHQRNIST MQIMGILADF 180 HGGIPNLTYT SKDGSNIRTH LRKRQA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 89 | KRRPLADPATANSSKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG214800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821875.1 | 2e-87 | protein FAR1-RELATED SEQUENCE 5-like isoform X3 | ||||
TrEMBL | A0A368QKN6 | 8e-78 | A0A368QKN6_SETIT; Uncharacterized protein | ||||
TrEMBL | K3ZL59 | 7e-76 | K3ZL59_SETIT; Uncharacterized protein | ||||
STRING | Sb03g011225.1 | 2e-84 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-12 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG214800.1.p |