PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG199000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 628aa    MW: 70493.3 Da    PI: 8.1545
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG199000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.3e-1457100145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + rW++eE ell ++v+++G+++W tIa  ++  R +  c srw 
  Pavir.1KG199000.1.p  57 KCRWSPEENELLTKLVNKHGTKNWQTIACALP-DRNAHACLSRWK 100
                          569*****************************.***********7 PP
2Myb_DNA-binding45.32e-14109151145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +W+++E+++l++a++ +G++ W + a++++ gRt + +k++w+
  Pavir.1KG199000.1.p 109 KEAWSQQEELRLIRAHQIYGNK-WCKMAKHFP-GRTNNALKEHWR 151
                          579*******************.*********.***********7 PP
3Myb_DNA-binding44.14.9e-14311354145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +grW +eE e+l + v+++G ++W+tIa+ ++ gR + qc+ rw 
  Pavir.1KG199000.1.p 311 KGRWLAEENEILTKMVTKHGLKNWRTIASAIP-GRNALQCRIRWT 354
                          79******************************.***********5 PP
4Myb_DNA-binding34.93.5e-11364405245
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            W+++E+++l++a++ +G+  W +  ++++ gRt   +k++w+
  Pavir.1KG199000.1.p 364 EDWSEQEELKLIRAHQIYGSQ-WLKMVKHFP-GRTNHALKEHWR 405
                          67*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.26952101IPR017930Myb domain
SuperFamilySSF466894.03E-2655150IPR009057Homeodomain-like
SMARTSM007171.4E-1156105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-1959112IPR009057Homeodomain-like
CDDcd001674.76E-1059103No hitNo description
PfamPF139211.2E-1260120No hitNo description
PROSITE profilePS5129421.716104158IPR017930Myb domain
SMARTSM007173.1E-14108156IPR001005SANT/Myb domain
CDDcd001671.21E-10111151No hitNo description
Gene3DG3DSA:1.10.10.601.1E-18113158IPR009057Homeodomain-like
PROSITE profilePS5129419.906306361IPR017930Myb domain
SuperFamilySSF466896.24E-24309404IPR009057Homeodomain-like
SMARTSM007172.6E-12310359IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-20312364IPR009057Homeodomain-like
CDDcd001675.34E-10313357No hitNo description
PfamPF139211.1E-14314374No hitNo description
SMARTSM007174.3E-10362410IPR001005SANT/Myb domain
PROSITE profilePS5129413.964362412IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-15365412IPR009057Homeodomain-like
CDDcd001673.85E-8366405No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MEQSSDGMPR PRRNVSSTNH STNSDAVAEG TLNGPPCKKN LHSFNECSSS KNLERTKCRW  60
SPEENELLTK LVNKHGTKNW QTIACALPDR NAHACLSRWK YILDPAINKE AWSQQEELRL  120
IRAHQIYGNK WCKMAKHFPG RTNNALKEHW RGSMKRKLDS YLASGLLEQV PDLHENLSIP  180
QSSQSDIPKD SKVSSDRIRF SSRSKFKQNI TELSGDTSVG ESSDSIYAKA FDAHSAKVSE  240
NIIAKPQQWA TAKKKLDLVS SPVKLKSDVP PETVKHHHQE IESEKTEGPP CKKNGYCFKQ  300
GSTLKNSERT KGRWLAEENE ILTKMVTKHG LKNWRTIASA IPGRNALQCR IRWTRSLDPA  360
INKEDWSEQE ELKLIRAHQI YGSQWLKMVK HFPGRTNHAL KEHWRGCMKG KLNYYLASGM  420
LEQIPDLQEN LSVPESSHSE IPKDGQGSSE RNRPPSLPLR PKSESDLSEH DENAYISEEE  480
SSHCIYPKGL DAHSAEVYEK VIAKSMQRAR ARRKLDFLST PVELKVCTAA ASCQRPPPKM  540
EQTIPTSDNS SPPDVCQDIL QNAAAERVDV VIPTAASNPP NDIPSQATPD PCSPEIHEAN  600
ASDPLDMPYC DDLIIDSPPY LHGSSFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23604136110B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.212610.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG199000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791248.10.0transcription factor MYB3R-2-like
TrEMBLA0A2S3GN720.0A0A2S3GN72_9POAL; Uncharacterized protein
STRINGPavir.J00515.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142631723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.12e-38myb domain protein 3r-4