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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.1KG184900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 259aa MW: 26747 Da PI: 4.6696 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1KG184900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 57 | 4.7e-18 | 51 | 98 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
+ y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++
Pavir.1KG184900.1.p 51 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 98
57*****998.**********843...6*********************985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MPDGEVPSPA SSGGTSSSPP LSPVELAGPR RGGGGGAEKR ARDRDGGERH PSYRGVRMRA 60 WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDAAALVVK GPAAVLNFPE MAAALPRPAS 120 AAPRDVQAAA ARAAAMEPAL LPPDGGEGPA VAAVSLQPAP PVPAAGQLQQ DEELEAIVEL 180 PRLDEDCGEH VMTTAATAFG AAPPFSFHDA ATPAPWCDPV WIDDDCAGYA AAGHDDLFGL 240 DGGDHGWAQS VPALLWNL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP004857 | 1e-113 | AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06. |
GenBank | AP014958 | 1e-113 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
GenBank | AY258281 | 1e-113 | AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds. |