PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG182100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 274aa    MW: 28597.2 Da    PI: 9.6386
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG182100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.71.3e-31131022100
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F+ k+y++++d++++ ++ w +++nsfvv d+  f++++L  +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h  F +g++
  Pavir.1KG182100.1.p  13 FVAKTYRMVDDPSTDAVVAWGRDSNSFVVADPFAFSQTLLLAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVAFLRGQT 93 
                          9****************************************************************999.........************* PP

                          XXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrk 100
                          +ll +i r+
  Pavir.1KG182100.1.p  94 HLLPQIVRR 102
                          ******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-319102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-499102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-359102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-161336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-2813102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-165163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-166476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MASAEAAAGV APFVAKTYRM VDDPSTDAVV AWGRDSNSFV VADPFAFSQT LLLAHFKHSN  60
FSSFVRQLNT YGFRKVDPDR WEFAHVAFLR GQTHLLPQIV RRGGGGGGKR KDDGSSCGAN  120
AGAAADEDAV AMEVVRLRRE QRAIEDQVAA MWRRVQETER RSKQMLAFLL KVAGDPQVLR  180
RLVSSTAAGS GGGGGGAVRF AAAAPEGERG AAGEVAAKRA RLLLDDAPVY GAGAGPSAAD  240
LGAGFYGAGG EDLGFGAKAA GGYLQPPPYV LLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-22410220129Heat shock factor protein 1
5d5v_B1e-22410220129Heat shock factor protein 1
5d5v_D1e-22410220129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.8910.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG182100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766691e-166EU976669.1 Zea mays clone 986698 heat shock factor protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799113.11e-138heat stress transcription factor C-2a-like
SwissprotQ6EUG48e-92HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A2T8KUN31e-137A0A2T8KUN3_9POAL; Uncharacterized protein
STRINGGRMZM2G105348_P011e-117(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-50heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]