PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG180200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 530aa    MW: 57876.9 Da    PI: 6.4653
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG180200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-31121174255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  Pavir.1KG180200.1.p 121 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 174
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-28117175IPR009057Homeodomain-like
PROSITE profilePS5129412.658117177IPR017930Myb domain
SuperFamilySSF466895.02E-14120175IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-22121176IPR006447Myb domain, plants
PfamPF002499.2E-9122173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MVAREEQVMR ELKDKGVLVE ILDDDDGERS IDNKLLDLNE GFDDAESEEG EVGDDEQDEG  60
AEGDDGGSTT DVGGSGSSSN NSSTNNNTES KKGDNKEGSK SEGSGEQRVP TVRQYNRSRL  120
PRLRWTPDLH MAFVHAVERL GGQERATPKL VLQMMNVRGL SIAHVKSHLQ MYRSKKLDQD  180
GRPRGAISSV YSPMDFHFMR GDRRFHEMSF FQRAAALSSS KPEHGSFFAP RNCSAPELSR  240
LYGLLQHLPA PQTFDFRNSR NHERASSQRE APTVLSRKDV TPPSTTAPHQ AHPLAAPAAL  300
RSERRWWPFT EAGAAAATGE RRAVETGREV DFANSIGSSS RRPHYLWGVS VPGDPRLPFR  360
WRPGGGSSGG RDAAVGYPSN ITKITTRSSD PVVIDEALDA QQLERPKHVE PTRDSAMAAY  420
EACRRKRSPP VEAAQDDGAA DLQLSLSPTT VTDAKKRKTT APSEQEIMDA SELSISLSLS  480
PSAAAASMQK QQQQQQKTRR SINDSTGGSG EAVLGQSTLD LTMSIRALE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-18122176357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-18122176357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-18122176357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-18122176357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG180200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824409.10.0uncharacterized protein LOC112899951 isoform X1
TrEMBLA0A2S3GN020.0A0A2S3GN02_9POAL; Uncharacterized protein
STRINGPavir.Aa02813.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.14e-33G2-like family protein