PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG142300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 604aa MW: 64569.1 Da PI: 9.8633

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG142300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	31.9	3.6e-10	256	344	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 qr w ++De+ +L l +++g+ p+ d +++++ ++++ k + +++ eK+r+LK +++k v++ ++ ske++ +++el Pavir.1KG142300.1.p 256 NQRHWGKNDEMKILEVLAAHVKSEGTLPKT--DFIISTIGDRLDRKnCTYTDMYEKVRQLKGRYEKAVST-----GIVPSKEDELQMYEL 338 69****************9999977665..5699***87527889*************99.....6677888899* PP DUF573 92 skkiWg 97 s+ +Wg Pavir.1KG142300.1.p 339 SEAVWG 344 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.1E-14	257	344	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MAPRKRRAPS PPPPPPLPQE EQESSEESGS EELVPPSPPG RRMPPPAAAA AAADLSEGSD 60 SDSDTDAQAF QLQVHRSPTK QPPPHQDPQP ESDGDGDDEE VPASESEPEN PEPVVQKAAA 120 AAAAGKSKAE QERKRPPADP APSGKAKKAK AGAEKAAAAA AAEATRPAKK GKAQPDKVAP 180 EAIPAGKAKK VKAEPEKAAP EAIPAGKGKK GKAEPEKAAP EATPASKGKK GGAKPEKPVA 240 LDTSPSSSKS EKPARNQRHW GKNDEMKILE VLAAHVKSEG TLPKTDFIIS TIGDRLDRKN 300 CTYTDMYEKV RQLKGRYEKA VSTGIVPSKE DELQMYELSE AVWGEKTKEA IAAATSQNDG 360 AVTKSKKGHA NKQKIDGYSK GGAPKEAAAS TSNQDGDSQK VSKKGQGSKV KTERDLKSRL 420 SKEATTTGQP SKNKKRENHN EELDKDAKSD VLKDATTNGT QNGSNLAKGK RKKTDKGKMD 480 IDRDSLMPKE ATAPNQNGST STKNKEGKTH DEEIKRDANV QGMRRGFDEL QSQYSNLAAY 540 VAEIEARNPC GETLKRAFEF IGDEKAQSLE SKVKKQRVNE AKVLIRRADV KKDVLNMLMS 600 LVD*

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MAPRKRRAPS PPPPPPLPQE EQESSEESGS EELVPPSPPG RRMPPPAAAA AAADLSEGSD  60
SDSDTDAQAF QLQVHRSPTK QPPPHQDPQP ESDGDGDDEE VPASESEPEN PEPVVQKAAA  120
AAAAGKSKAE QERKRPPADP APSGKAKKAK AGAEKAAAAA AAEATRPAKK GKAQPDKVAP  180
EAIPAGKAKK VKAEPEKAAP EAIPAGKGKK GKAEPEKAAP EATPASKGKK GGAKPEKPVA  240
LDTSPSSSKS EKPARNQRHW GKNDEMKILE VLAAHVKSEG TLPKTDFIIS TIGDRLDRKN  300
CTYTDMYEKV RQLKGRYEKA VSTGIVPSKE DELQMYELSE AVWGEKTKEA IAAATSQNDG  360
AVTKSKKGHA NKQKIDGYSK GGAPKEAAAS TSNQDGDSQK VSKKGQGSKV KTERDLKSRL  420
SKEATTTGQP SKNKKRENHN EELDKDAKSD VLKDATTNGT QNGSNLAKGK RKKTDKGKMD  480
IDRDSLMPKE ATAPNQNGST STKNKEGKTH DEEIKRDANV QGMRRGFDEL QSQYSNLAAY  540
VAEIEARNPC GETLKRAFEF IGDEKAQSLE SKVKKQRVNE AKVLIRRADV KKDVLNMLMS  600
LVD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.9467	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG142300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824313.1	0.0	recombination repair protein 1-like
TrEMBL	A0A3L6QKN4	0.0	A0A3L6QKN4_PANMI; Hepatoma-derived growth factor-related protein 2-like
STRING	Pavir.Ab01142.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37

Link Out ? help Back to Top
Phytozome	Pavir.1KG142300.1.p