PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG135200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 301aa    MW: 32050.9 Da    PI: 7.8117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG135200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1871121155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta +Aa+a++aa+++l+g
  Pavir.1KG135200.1.p  71 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALDAARAYDAAARALYG 121
                          679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-3172135IPR001471AP2/ERF domain
PROSITE profilePS5103220.41572129IPR001471AP2/ERF domain
PfamPF008475.7E-1273121IPR001471AP2/ERF domain
CDDcd000181.34E-1473104No hitNo description
Gene3DG3DSA:3.30.730.101.5E-2873128IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1973128IPR016177DNA-binding domain
PRINTSPR003673.4E-97384IPR001471AP2/ERF domain
PRINTSPR003673.4E-995111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDVVAQQQRR LPLPPFHQQG VPAGADGGGG RQPQQHQQKG AGSGGGRKCC PLRRSRKGCM  60
KGKGGPENQR CPFRGVRQRT WGKWVAEIRE PNRGARLWLG TFATALDAAR AYDAAARALY  120
GDCARLNLMP ALPQAAAAAA NNNMVVMKAS PAVSPSSPGR HHQYYNYKQQ EPVMMAAAMT  180
HSAPCSSADD ASPNSNCSNY SNSSSSAATT PTAAMQQMIA DELAAAADHL HQQQQQAEAE  240
DFEDYVSRLP KAEDFGLGGF QEVPPEVFDE AAGGGIWDHT VAWPPSPAMM LDSALQVVPL  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1373128662ATERF1
3gcc_A2e-1373128662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG135200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081431e-103AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046231e-103AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054111e-103AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149641e-103AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393751e-103AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126161e-103CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680796.18e-90dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA12e-74DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA0A2S3H7M21e-134A0A2S3H7M2_9POAL; Uncharacterized protein
TrEMBLA0A2T7E7541e-134A0A2T7E754_9POAL; Uncharacterized protein
STRINGPavir.J25464.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.11e-28ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]