PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG133800.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 543aa    MW: 61396.9 Da    PI: 7.9609
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG133800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS251.43.6e-772515081260
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l+ lL++cA+a+  ++l  a +lL++++++asp+gd+ qRla yf+++L+arla+++ ++y++l  ++t+    ++ l+a++lf+ ++P+
  Pavir.1KG133800.3.p 251 LRALLIQCAQAIVVNNLPFAGELLKKIRQHASPYGDSSQRLALYFANGLEARLAGTGFKMYQKLMEKRTR---ATDMLKAYRLFVAACPF 337
                          5789*********************************************************999999998...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +k+++   Nq+I + +++  +vHiiDf+i++G+QWp+L++ +a+R++gpp+lRiTg+g p++g     ++ +tg+rLa++A+ ++vpf++
  Pavir.1KG133800.3.p 338 PKVAYYFSNQTIADVLNRRPKVHIIDFGITMGFQWPSLIKRFAKREGGPPKLRITGIGVPQPGfrPCAMIDATGKRLAEYAKMFNVPFQY 427
                          **************************************************************999999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                          +  +a+r+e++ +e+L+++++E+l+Vn+++q ++l de+ +++s+rd+vL+++k+++P+v+++   +  +ns+ Fl rf e 
  Pavir.1KG133800.3.p 428 QG-IASRWENICIEDLNIDKDEVLIVNCMYQTKYLGDETEDIDSARDRVLRIMKKINPEVLILGMINGFYNSPFFLPRFREH 508
                          **.7***************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.507225542IPR005202Transcription factor GRAS
PfamPF035141.2E-74251508IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MESPEYCEIN SNMTLDYINR LLMEDTDERA SIYQQHDALQ ATEKPFYDIL GQAYPSSSPK  60
ETMIHTYSHI DCPQDSSNSY TEREGSGSFA SDILGPQGTQ LVANDWVSEC DRLSSQFQRG  120
AEEANKLVPS IEKLVVDLDS NGHSDYNQMI GAATGQKIKH VNKIWNHPHA DLELSEARNS  180
KHLAISASET IRDETFDSVL LCDWEVHSDA AYLREMKVKE ASNSRQNVQS KEYGQGQVKS  240
RGKKKEEGID LRALLIQCAQ AIVVNNLPFA GELLKKIRQH ASPYGDSSQR LALYFANGLE  300
ARLAGTGFKM YQKLMEKRTR ATDMLKAYRL FVAACPFPKV AYYFSNQTIA DVLNRRPKVH  360
IIDFGITMGF QWPSLIKRFA KREGGPPKLR ITGIGVPQPG FRPCAMIDAT GKRLAEYAKM  420
FNVPFQYQGI ASRWENICIE DLNIDKDEVL IVNCMYQTKY LGDETEDIDS ARDRVLRIMK  480
KINPEVLILG MINGFYNSPF FLPRFREHAK VQKGLRGQRL TNSGKQEVLR LGSSNFLLIK  540
QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-432415079265Protein SCARECROW
5b3h_A4e-432415078264Protein SCARECROW
5b3h_D4e-432415078264Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG133800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680688.10.0scarecrow-like protein 9
RefseqXP_022680689.10.0scarecrow-like protein 9
TrEMBLA0A2T7E7420.0A0A2T7E742_9POAL; Uncharacterized protein
STRINGPavir.J21106.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-109GRAS family protein