PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG088700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 239aa MW: 25450.3 Da PI: 9.7298

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG088700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22	3.6e-07	141	183	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk ++ e ++ v +L+aeN++L++e+ l+ +++l +e+ Pavir.1KG088700.1.p 141 RPRKKLRLPEVQQLVRSLTAENDSLREEMRALQRACKALSKEN 183 99*************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.8E-5	140	180	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MAAAACADAD ADALAADIIC SLRGADLAGW TPPWCKPAPC EGELIWPPVA RGKRSRRRSP 60 SAGPAAAGKG RWGRGSPASP LDYSGGSGSG GSTSGGDDGG GFCSPGHRLA PATKVGSIGR 120 PQLPFPTPTF PTQPTRATGQ RPRKKLRLPE VQQLVRSLTA ENDSLREEMR ALQRACKALS 180 KENDKLEVTS TVLICFSCSF VSQIGMWATI WYLLVEWLIK RLSCFGLKHK VEIFIFLI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	RPRKKLR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.2578	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG088700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794252.1	3e-87	uncharacterized protein LOC112874890 isoform X2
TrEMBL	A0A2T7F2T8	8e-88	A0A2T7F2T8_9POAL; Uncharacterized protein
STRING	Pavir.J07681.1.p	1e-131	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51

Link Out ? help Back to Top
Phytozome	Pavir.1KG088700.1.p