PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C3H

Protein Properties

Length: 455aa MW: 52381.1 Da PI: 10.2834

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG065100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.7e-07	33	57	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC+ ++r G C++ d C+FaHg+ Pavir.1KG065100.1.p 33 YKTKLCSLWQR-GGCPR-DPCSFAHGR 57 9********.*.*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.3E-12	27	62	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.55E-5	31	62	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.002	32	57	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.005	32	58	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.1E-5	33	57	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MRDRSPDRES PSRERGDRPP PGMLDPPRRG PAYKTKLCSL WQRGGCPRDP CSFAHGRSEL 60 RRFPGSRTSF PPRAGSRDYR GGDFRDRFDR RRSPHRRHSP DRDSRGHRSR HDRRAVSQER 120 ESSYSRSPSR KSERRHEKKP DDGETNSSRS LSISDKNDDK KKEALLGAND KEDQEIQLKQ 180 KRQDMELLRE DKSRLEIILD EKNDEVHKIS SRVNDLELQI RKEKEECHRM TSKMKKFIKA 240 HARFLKAQEE LKRSQARFER LGDLLASDIL KRVANEEVSS MNVDEDPNGP SERSPNAATA 300 KKRSIPYSTS EEAKAVKKRT YLDAEFDKPS LGTEPTKAVY LKKKLWEDEK DKIVNVVSSA 360 NIDKVKDSPA RHVLPSTVMA AHAVDDLFKA VELEARHYPI NASVENGAGC ETRLPAIPHS 420 HHQCLMLTSR MRVMMRKSTW SKWMVEMVEV ILVC*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MRDRSPDRES PSRERGDRPP PGMLDPPRRG PAYKTKLCSL WQRGGCPRDP CSFAHGRSEL  60
RRFPGSRTSF PPRAGSRDYR GGDFRDRFDR RRSPHRRHSP DRDSRGHRSR HDRRAVSQER  120
ESSYSRSPSR KSERRHEKKP DDGETNSSRS LSISDKNDDK KKEALLGAND KEDQEIQLKQ  180
KRQDMELLRE DKSRLEIILD EKNDEVHKIS SRVNDLELQI RKEKEECHRM TSKMKKFIKA  240
HARFLKAQEE LKRSQARFER LGDLLASDIL KRVANEEVSS MNVDEDPNGP SERSPNAATA  300
KKRSIPYSTS EEAKAVKKRT YLDAEFDKPS LGTEPTKAVY LKKKLWEDEK DKIVNVVSSA  360
NIDKVKDSPA RHVLPSTVMA AHAVDDLFKA VELEARHYPI NASVENGAGC ETRLPAIPHS  420
HHQCLMLTSR MRVMMRKSTW SKWMVEMVEV ILVC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG065100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040240	0.0	BT040240.1 Zea mays full-length cDNA clone ZM_BFc0072P19 mRNA, complete cds.
GenBank	EU962039	0.0	EU962039.1 Zea mays clone 239776 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815366.1	0.0	zinc finger CCCH domain-containing protein 13-like isoform X1
Swissprot	Q6H7U2	0.0	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	A0A2T8KU07	0.0	A0A2T8KU07_9POAL; Uncharacterized protein
STRING	Pavir.Ab00438.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	2e-21	C3H family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG065100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]