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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.1KG043600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
SBP |
Protein Properties |
Length: 472aa MW: 50667.5 Da PI: 8.9297 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1KG043600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 130.4 | 6.3e-41 | 178 | 254 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
CqvegC+ dls+ak+yhr+hkvCe+hskap+v+v+gle+rfCqqCsrfh l+ fD++krsCrrrL++hn+rrrk+q+
Pavir.1KG043600.1.p 178 CQVEGCKIDLSSAKDYHRKHKVCEAHSKAPKVVVAGLERRFCQQCSRFHGLDLFDQKKRSCRRRLNDHNARRRKPQP 254
**************************************************************************997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 472 aa
Download sequence Send
to blast |
MGSFGMDWNQ KGSVLWDWEN LPLIGTSGNE SAKMIATQAE AKFSAAEVTR HGSVHSSCGT 60 FSSNSEMGYG SSKSSISASI DSSPKVGKNM ELNFAPARVS DKNTVLVKVD DARTSPSSVI 120 AVSSGELVLS LKLGKRTYFE DVCGGQSVKS SPSDTSTVTP PALVKKAKAA QNAQNTYCQV 180 EGCKIDLSSA KDYHRKHKVC EAHSKAPKVV VAGLERRFCQ QCSRFHGLDL FDQKKRSCRR 240 RLNDHNARRR KPQPEAISFG SSRLSAMFYD ARQQTTLHFG QVPYGQMRSC TSSSWDNPGG 300 AFKFAETKAP WLKPARAAGI DGLHLSSQQV WNNIMPHGGH QDFDGFMGFN GTSAKILNQG 360 DEASASVSNS NGNPDLQRAL SLLSNNSAGA GNNHPTTQLH PGLSTLASTS NAVMQASSPG 420 LWQDGTALDL HARFQALDPL GSGSAIPTTH EVQLPKPSLF DDSSSHYDLM H*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 233 | 250 | KKRSCRRRLNDHNARRRK |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. |
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help
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Source |
Description |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |