PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J02084.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 857aa    MW: 93101.5 Da    PI: 5.2865
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J02084.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.4e-085280125
                    --S---SGGGGTS....--TTTTT-SS-S CS
         zf-CCCH  1 yktelCrffartG....tCkyGdrCkFaH 25
                    +kt+lC++f+r G     C++G++C++aH
  Pahal.J02084.1 52 WKTSLCSYFRRRGagaeGCSHGESCRYAH 80
                    8**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-124787IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.26E-64987IPR000571Zinc finger, CCCH-type
SMARTSM003560.00145182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4695183IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-65280IPR000571Zinc finger, CCCH-type
CDDcd005903.23E-6128194No hitNo description
Gene3DG3DSA:3.30.70.3301.8E-6130203IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549285.76E-7131200IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168740.761245856IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533353.65E-45247273IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.65E-45305432IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.65E-45480596IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1505.9E-61493596IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138471.6E-8536599IPR025714Methyltransferase domain
CDDcd024401.60E-6542596No hitNo description
Gene3DG3DSA:3.40.50.1505.9E-61739796IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.65E-45744856IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059583.1E-6748792IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300752784IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1505.9E-61831856IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MEDTTTPPSQ PELAGEKRKR EEGSPDAAVV DAPSVPAASG EDAASGSRHP MWKTSLCSYF  60
RRRGAGAEGC SHGESCRYAH TEEELRPRAD GTWDPTSHRA KKLRKVAAEA QEEAEEEVTV  120
DEQSLDKCLV GLPRGWTADR LKAFLQDQGI SYATAKKKKG MTVGFVTFES VEQLTHAVQV  180
LKENPSGGKE IKISDANRRS HQKVRAEGPV ANGTATENGS SPATPAGETS ASEVVASSKK  240
SARDAVTPLA LMPYNDQLEH KKHSMAQILK RLTRNARKAC PPAIPLPNWI FKSKEIGGLP  300
CKLEGILESP IVDGYRNKCE FSVGYSLEGK KTVGFMLGNF REGVTAVEEP VNCPNVSEIS  360
CKYAQMFQDF LQSSSLPLWS RVDNCGFWRQ FTVREGRCPA EAVVLQNGES QISEVMLIVQ  420
VCSTDVDEAL MKEEFDKLSA ALIQGATTCS PPLPVTTIVV QDHKGISNAA PADCPLIPLL  480
MPKGNQLEGG AEDKTRIHDH ISNLKFSISP TAFFQVNTLA AERLYTLAGD WANLNSDTLL  540
FDVCCGTGTI GLTLAHRVGM VVGIEMNESA VSDAHRNALI NDIKNCRFVC GKAEDVIGSL  600
LTEYLGSPQQ HIAASQSNSV INDTSKNEDT MNCPENDGEN MDSSMEKNDN GENEQPRDRS  660
VDLPTCFGDE DIKGDSVYRV NKEADSNPDE HNEAAGEQNC GEASLINDEP TDATSADSLD  720
HGKTCQDSSS IPNNNVLAAS ACQFRNVVAI VDPPRVGLHP TVIKALRTHP LIRRLVYISC  780
NPDSLVANAI ELCTPTSEKQ EKNKGNRGWR SMSAAGLARQ RTKSMPNSEP FIPKRAMAVD  840
LFPHTSHCEM VMLFER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-16497603265371Uncharacterized RNA methyltransferase SP_1029
5xj2_A4e-16497603265371Uncharacterized RNA methyltransferase SP_1029
5xj2_B4e-16497603265371Uncharacterized RNA methyltransferase SP_1029
5xj2_C4e-16497603265371Uncharacterized RNA methyltransferase SP_1029
5xj2_D4e-16497603265371Uncharacterized RNA methyltransferase SP_1029
5zq0_A4e-16497603266372Uncharacterized RNA methyltransferase SP_1029
5zq1_A4e-16497603265371Uncharacterized RNA methyltransferase SP_1029
5zq8_A4e-16497603265371Uncharacterized RNA methyltransferase SP_1029
5zq8_B4e-16497603265371Uncharacterized RNA methyltransferase SP_1029
5zth_A4e-16497603266372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269830.0KJ726983.1 Zea mays clone pUT3684 C3H transcription factor (C3H10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824350.10.0zinc finger CCCH domain-containing protein 24
TrEMBLA0A270R6120.0A0A270R612_9POAL; Uncharacterized protein
STRINGPavir.J09831.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein