PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Pahal.J01949.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C3H

Protein Properties

Length: 272aa MW: 29408.1 Da PI: 5.0882

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.J01949.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.5e-06	113	138	3	26
S---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG...tCkyGdrCkFaHg 26 e+C++f+r C++G+ C+FaHg Pahal.J01949.1 113 GEPCPDFRR-RpgaACPRGSGCPFAHG 138 589**99.558***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.798	110	140	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-5	111	142	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.9E-4	145	176	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MVSREHSHSY EQLMLDPATL GGSACSWAEA AALEIIPPQL LAALGEYLSA GHAGDGDAAE 60 AEADAEADDE FMMYEFKVRR CVRPRSHDWT ACPYAHPGEA ARRRDPRRVA YAGEPCPDFR 120 RRPGAACPRG SGCPFAHGTF ELWLHPSRYR TRPCRAGAAC RRRVCFFAHA AAELRAASKD 180 DGGSLSLSPK STLASLWESP PVSPVEGRMR WLDAVDEASD ADAEVEELML AMRELSFRKA 240 AAASALVAAP VLPPVTEEDG PDLGWVSELV M*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067691	1e-149	BT067691.1 Zea mays full-length cDNA clone ZM_BFc0130E04 mRNA, complete cds.
GenBank	EU953602	1e-149	EU953602.1 Zea mays clone 1437892 CCCH transcription factor mRNA, complete cds.
GenBank	EU955047	1e-149	EU955047.1 Zea mays clone 1505137 CCCH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809599.1	0.0	zinc finger CCCH domain-containing protein 37-like
Swissprot	Q65X92	1e-129	C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBL	A0A270R7E3	0.0	A0A270R7E3_9POAL; Uncharacterized protein
STRING	Si022958m	1e-141	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11209	19	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	2e-35	C3H family protein

Link Out ? help Back to Top
Phytozome	Pahal.J01949.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]