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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.J01890.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 338aa MW: 36069.6 Da PI: 7.0125 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.J01890.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 44.6 | 2.5e-14 | 117 | 168 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P+a ++++ + a+i+ A++++k+L+
Pahal.J01890.1 117 QRMTHIAVERNRRKQMNEYLAVLRSLMPPA---YAQRGDQASIVGGAINFVKELE 168
79****************************...*******************995 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MALEAVVLSQ SQQQGSSRRF GCGAMAGGPS NGLFGGAEGA LELSGAGLGS WDAPACSSSM 60 LLREFQEPAG NIPAAAVPPV ESGVSVGQEE ATAVAPVARR KRRRMRTVKN KEEVESQRMT 120 HIAVERNRRK QMNEYLAVLR SLMPPAYAQR GDQASIVGGA INFVKELEQL LQSLEARRQR 180 SAQRPGTGVG GDDAAPFAGF FTFPQYSMRA AAAPEHATAD ATTHRDGGAE AEDASGSKPS 240 AVADVEATMV ESHANLRVLS RRRPRQLLRL VVGLQGHRLT VLHLNMSSAG QMVLYSFSLK 300 VEDDCQLTSV DEIAAATHQI VEMIHQEQGC SLEQHQA*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 99 | 103 | RKRRR |
2 | 117 | 128 | RMTHIAVERNRR |