PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01590.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 410aa    MW: 45415.8 Da    PI: 4.3352
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01590.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.42e-5161331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtd elv++yLk+k+ gkkl + ++i+evd+yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd++++
  Pahal.J01590.2   6 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVDLYKFPPWDLPdKsSLRSKDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGKDRTIM 99 
                     79*************************988.89**************95335666777************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++vg+kktL+f++g+apkg +tdWvm ey++
  Pahal.J01590.2 100 L-NSRVVGMKKTLIFHEGKAPKGDRTDWVMYEYKM 133
                     *.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-623156IPR003441NAC domain
PROSITE profilePS5100557.9826156IPR003441NAC domain
PfamPF023652.5E-267132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKLIVDAISE VDLYKFPPWD LPDKSSLRSK  60
DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRTIML NSRVVGMKKT LIFHEGKAPK  120
GDRTDWVMYE YKMEDEDLVS AGFSKDAFVL CKIFKKSGLG PRIGEQYGAP FNEAEWDNAE  180
AETSMFPLMT SSEVVNPMDG PHAQHAVPAD IPAQQSVDGV VSGINTSNGV NDMYGPPDCD  240
GFLLEELSRF LNDSPLRDTT LGESSGLPPM SEAEAHAFEV NTFGLYNELS GIAGLEGVPN  300
NFSASNVAAT DYMALPPDRE LSTDDFIELN DLLASDPSFP SEFPAQNSQF MQYPPAQPTY  360
NGHYDIAALS GSMEPTMPTN FNVFPPDNGG FTADEATNYS YQTMQYPFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-52215711169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279770.0KJ727977.1 Zea mays clone pUT6091 NAC transcription factor (NAC38) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806087.10.0NAC domain-containing protein 16-like isoform X2
TrEMBLA0A270R5T30.0A0A270R5T3_9POAL; Uncharacterized protein
STRINGPavir.J07259.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.19e-85NAC domain containing protein 103