PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J01590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 456aa MW: 50038.8 Da PI: 4.2731 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.1 | 2.4e-51 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtd elv++yLk+k+ gkkl + ++i+evd+yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nrat +gyWk++gkd++++ Pahal.J01590.1 6 LPPGFRFHPTDVELVSYYLKRKIMGKKLIV-DAISEVDLYKFPPWDLPdKsSLRSKDLEWFFFCPRDKKYPNGSRTNRATPNGYWKTSGKDRTIM 99 79*************************988.89**************95335666777************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktL+f++g+apkg +tdWvm ey++ Pahal.J01590.1 100 L-NSRVVGMKKTLIFHEGKAPKGDRTDWVMYEYKM 133 *.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-62 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.982 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-26 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKLIVDAISE VDLYKFPPWD LPDKSSLRSK 60 DLEWFFFCPR DKKYPNGSRT NRATPNGYWK TSGKDRTIML NSRVVGMKKT LIFHEGKAPK 120 GDRTDWVMYE YKMEDEDLVS AGFSKDAFVL CKIFKKSGLG PRIGEQYGAP FNEAEWDNAE 180 AETSMFPLMT SSEVVNPMDG PHAQHAVPAG TAREPPLQNT SVACVGEESS FDHATGTTSV 240 EDLTFGCAIA GTAIQDIPAQ QSVDGVVSGI NTSNGVNDMY GPPDCDGFLL EELSRFLNDS 300 PLRDTTLGES SGLPPMSEAE AHAFEVNTFG LYNELSGIAG LEGVPNNFSA SNVAATDYMA 360 LPPDRELSTD DFIELNDLLA SDPSFPSEFP AQNSQFMQYP PAQPTYNGHY DIAALSGSME 420 PTMPTNFNVF PPDNGGFTAD EATNYSYQTM QYPFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-52 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727977 | 0.0 | KJ727977.1 Zea mays clone pUT6091 NAC transcription factor (NAC38) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806086.1 | 0.0 | NAC domain-containing protein 82-like isoform X1 | ||||
TrEMBL | A0A270R556 | 0.0 | A0A270R556_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07259.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4731 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 6e-84 | NAC domain containing protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J01590.1 |