PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01169.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 338aa    MW: 36125.7 Da    PI: 6.3105
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01169.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44e-51231521128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrF+Ptd+e++v+yLkkk+++    ++++i++vdiyk++Pw+Lp  k+  ++ ew+fFs+rd+ky++g r+nr++ sgyWkatg+dk++l+
  Pahal.J01169.1  23 LPPGFRFQPTDQEIIVYYLKKKIAAAAAAVTSIIADVDIYKFDPWELPaDKAVFGDGEWFFFSPRDRKYPNGARPNRTAGSGYWKATGTDKPILA 117
                     79*************************999999***************556666899************************************** PP

             NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + +  g+kk Lvfy+gr+pkg+kt+Wvmheyrl
  Pahal.J01169.1 118 PgGAHCLGVKKALVFYQGRSPKGTKTEWVMHEYRL 152
                     9555669**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-5915181IPR003441NAC domain
PROSITE profilePS5100560.55723181IPR003441NAC domain
PfamPF023651.5E-2624152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEAAAAAAGG GSSSSLVFRG CPLPPGFRFQ PTDQEIIVYY LKKKIAAAAA AVTSIIADVD  60
IYKFDPWELP ADKAVFGDGE WFFFSPRDRK YPNGARPNRT AGSGYWKATG TDKPILAPGG  120
AHCLGVKKAL VFYQGRSPKG TKTEWVMHEY RLLDTDAALL TRPPTNSMRL DDWVLCRVRK  180
KQHGVDDWVH YSSSPSEPTT TTTPTRNAAV VLPPAEAVVP LPPATATYDA GIDWMNSDGQ  240
LLHYLIGGHG AGAGAGSGSP PPDPSAGASA HPAGDSAPPH SSLVSVLETI KRNLSFQAID  300
ELYLLQPSKR ANCMMVRGDD EQTSSFSVSE ADDEVFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-642318217166NO APICAL MERISTEM PROTEIN
1ut4_B2e-642318217166NO APICAL MERISTEM PROTEIN
1ut7_A2e-642318217166NO APICAL MERISTEM PROTEIN
1ut7_B2e-642318217166NO APICAL MERISTEM PROTEIN
4dul_A2e-642318217166NAC domain-containing protein 19
4dul_B2e-642318217166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815776.10.0NAC transcription factor 32-like
TrEMBLA0A2S3HZJ80.0A0A2S3HZJ8_9POAL; Uncharacterized protein
STRINGPavir.Ea00010.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137971929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-58NAC domain containing protein 25