PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01155.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 311aa    MW: 35391.1 Da    PI: 10.6051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01155.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88.1e-13301111697
                     EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                     l +pk +a  h + +++   +tl+   ++++W  ++  rk +++y+l++ W +Fv++n++++ D++++   +  ++f+++v ++
  Pahal.J01155.4  30 LAIPKGYAFGHFLHERT--NVTLQRpGKSKKWHPRFYQRKDKRMYMLRGQWLDFVRDNHVQVEDICILVPAKGgRRFTFTVYLL 111
                     789****9999888655..6888884667*******76999999************************9775558888888765 PP
2B356.35.8e-18216307699
                     ..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++dv+ + +++ l k+fa+ h  ++ +++  +l +   ++W+ k+ +  +s+r +l +GW  Fv++ngL++gD+++F+l+++ e +++v+++++
  Pahal.J01155.4 216 MNADVTYRyCIMELGKRFAAPHL-PH-RGQ-TVLLQCMKKVWKTKMVIHSGSRRWFLVGGWTTFVRDNGLRVGDICLFELKKKGELTMRVHIISR 307
                     467776666999*******9994.33.343.56667799*******9988888999999*********************9999999****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-166111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-167111IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-1414109No hitNo description
SMARTSM010190.007214114IPR003340B3 DNA binding domain
PROSITE profilePS508639.78415114IPR003340B3 DNA binding domain
PfamPF023625.2E-1130111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-22201306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-22204308IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-18212306No hitNo description
SMARTSM010196.2E-11212308IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52212308IPR003340B3 DNA binding domain
PfamPF023622.7E-15217307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAIIQEIQPE STVYVAVMRK CHILKPGPYL AIPKGYAFGH FLHERTNVTL QRPGKSKKWH  60
PRFYQRKDKR MYMLRGQWLD FVRDNHVQVE DICILVPAKG GRRFTFTVYL LHATATHSRG  120
GTAFQRVGSF HGRSSTKMAS AVHIKEASSD DHVSSDSDKD EASHKSLKSN SGGPSEAPYI  180
VSSKSCLSQS QKKIVEEKVR AIQSEVPVFV AIMKKMNADV TYRYCIMELG KRFAAPHLPH  240
RGQTVLLQCM KKVWKTKMVI HSGSRRWFLV GGWTTFVRDN GLRVGDICLF ELKKKGELTM  300
RVHIISREQF *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792770.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792772.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792773.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792774.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792775.10.0B3 domain-containing protein Os03g0619600-like isoform X1
SwissprotQ6AV211e-107Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A270R6840.0A0A270R684_9POAL; Uncharacterized protein
STRINGSi035266m1e-163(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-08B3 family protein