PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.J01155.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 403aa MW: 45444.1 Da PI: 10.2139

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.J01155.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.2	1.3e-12	122	203	16	97
EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 l +pk +a h + +++ +tl+ ++++W ++ rk +++y+l++ W +Fv++n++++ D++++ + ++f+++v ++ Pahal.J01155.3 122 LAIPKGYAFGHFLHERT--NVTLQRpGKSKKWHPRFYQRKDKRMYMLRGQWLDFVRDNHVQVEDICILVPAKGgRRFTFTVYLL 203 7899*9999888655..6888884667***76999999**********************9775558888888765 PP
2	B3	55.6	9.4e-18	308	399	6	99
..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 6 tpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++dv+ + +++ l k+fa+ h ++ +++ +l + ++W+ k+ + +s+r +l +GW Fv++ngL++gD+++F+l+++ e +++v+++++ Pahal.J01155.3 308 MNADVTYRyCIMELGKRFAAPHL-PH-RGQ-TVLLQCMKKVWKTKMVIHSGSRRWFLVGGWTTFVRDNGLRVGDICLFELKKKGELTMRVHIISR 399 467776666999*****9994.33.343.56667799***9988888999999*****************9999999**9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.5E-16	98	202	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-16	99	203	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.00E-14	106	201	No hit	No description
SMART	SM01019	0.0072	106	206	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.784	107	206	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.2E-11	122	203	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.1E-22	293	398	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-21	296	400	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.52	304	400	IPR003340	B3 DNA binding domain
SMART	SM01019	6.2E-11	304	400	IPR003340	B3 DNA binding domain
CDD	cd10017	2.13E-18	304	398	No hit	No description
Pfam	PF02362	4.4E-15	309	399	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MMLKLQSALI SSFHDPTESS ASERLVRCEK GGSSHREKTA KMVATSSSSE SSGEDNLSEN 60 ESFQLDDLQT NPGPNYVLSR GSYLSKAQEE RVMAIIQEIQ PESTVYVAVM RKCHILKPGP 120 YLAIPKGYAF GHFLHERTNV TLQRPGKSKK WHPRFYQRKD KRMYMLRGQW LDFVRDNHVQ 180 VEDICILVPA KGGRRFTFTV YLLHATATHS RGGTAFQRVG SFHGRSSTKM ASAVHIKEAS 240 SDDHVSSDSD KDEASHKSLK SNSGGPSEAP YIVSSKSCLS QSQKKIVEEK VRAIQSEVPV 300 FVAIMKKMNA DVTYRYCIME LGKRFAAPHL PHRGQTVLLQ CMKKVWKTKM VIHSGSRRWF 360 LVGGWTTFVR DNGLRVGDIC LFELKKKGEL TMRVHIISRE QF*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MMLKLQSALI SSFHDPTESS ASERLVRCEK GGSSHREKTA KMVATSSSSE SSGEDNLSEN  60
ESFQLDDLQT NPGPNYVLSR GSYLSKAQEE RVMAIIQEIQ PESTVYVAVM RKCHILKPGP  120
YLAIPKGYAF GHFLHERTNV TLQRPGKSKK WHPRFYQRKD KRMYMLRGQW LDFVRDNHVQ  180
VEDICILVPA KGGRRFTFTV YLLHATATHS RGGTAFQRVG SFHGRSSTKM ASAVHIKEAS  240
SDDHVSSDSD KDEASHKSLK SNSGGPSEAP YIVSSKSCLS QSQKKIVEEK VRAIQSEVPV  300
FVAIMKKMNA DVTYRYCIME LGKRFAAPHL PHRGQTVLLQ CMKKVWKTKM VIHSGSRRWF  360
LVGGWTTFVR DNGLRVGDIC LFELKKKGEL TMRVHIISRE QF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792770.1	0.0	B3 domain-containing protein Os03g0619600-like isoform X1
Refseq	XP_025792772.1	0.0	B3 domain-containing protein Os03g0619600-like isoform X1
Refseq	XP_025792773.1	0.0	B3 domain-containing protein Os03g0619600-like isoform X1
Refseq	XP_025792774.1	0.0	B3 domain-containing protein Os03g0619600-like isoform X1
Refseq	XP_025792775.1	0.0	B3 domain-containing protein Os03g0619600-like isoform X1
Refseq	XP_025792776.1	0.0	B3 domain-containing protein Os03g0619600-like isoform X2
Refseq	XP_025792777.1	0.0	B3 domain-containing protein Os03g0619600-like isoform X2
Swissprot	Q6AV21	1e-124	Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
Swissprot	Q6AV22	1e-124	Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBL	A0A270R684	0.0	A0A270R684_9POAL; Uncharacterized protein
STRING	Si035266m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-08	B3 family protein

Link Out ? help Back to Top
Phytozome	Pahal.J01155.3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]