PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01129.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 422aa    MW: 47146.8 Da    PI: 7.2858
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01129.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.45.2e-48131431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+GfrF+Ptdeelv +yLk+k++g+ ++    i++vd+  +ePw+Lp k  +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd+ + 
  Pahal.J01129.2  13 LPVGFRFRPTDEELVRHYLKPKIAGRAHPDLLLIPDVDLSACEPWELPaKaLIRSDDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATGKDRLIR 107
                     79*************************999889***************5346667888************************************* PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s+  g+l+g+kktLvf++grap+g++t W+mheyr 
  Pahal.J01129.2 108 SRrAGTLIGVKKTLVFHRGRAPRGHRTAWIMHEYRT 143
                     9877888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-5411164IPR003441NAC domain
PROSITE profilePS5100554.88513164IPR003441NAC domain
PfamPF023651.1E-2614142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPPPPPPPPP ESLPVGFRFR PTDEELVRHY LKPKIAGRAH PDLLLIPDVD LSACEPWELP  60
AKALIRSDDP EWFFFAPLDR KYPGGHRSNR STAAGYWKAT GKDRLIRSRR AGTLIGVKKT  120
LVFHRGRAPR GHRTAWIMHE YRTAEPQLQQ GQNGSFVLYR LFNKHEQEQE ASDASDTPST  180
SSPAYPRPIT PAVKSENLSR LATVETAHLL TTACTNNEPT AAQGGNLLLD VLAQLPDLQT  240
EQTYDGFPTI TSPMRPYTDH PFLGNVGGQD LSAYLDSIIA HHDLEDLLVC PSMAETVEHP  300
TGNVEPNPTP LLIPSSSSSN NKRSTENSWA NVDSERVRMA QMLLLAVLLQ PKYYKSIWVM  360
LIMTQELKLT HPPVCQLKHP TCTTSINFNL HSFPKWNHQI VEPYALVAHL LLIPNICSTI  420
W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-441217019174NAC domain-containing protein 19
3swm_B5e-441217019174NAC domain-containing protein 19
3swm_C5e-441217019174NAC domain-containing protein 19
3swm_D5e-441217019174NAC domain-containing protein 19
3swp_A5e-441217019174NAC domain-containing protein 19
3swp_B5e-441217019174NAC domain-containing protein 19
3swp_C5e-441217019174NAC domain-containing protein 19
3swp_D5e-441217019174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676351e-177BT067635.1 Zea mays full-length cDNA clone ZM_BFc0101L24 mRNA, complete cds.
GenBankEU9532631e-177EU953263.1 Zea mays clone 1394620 mRNA sequence.
GenBankKJ7269821e-177KJ726982.1 Zea mays clone pUT3683 NAC transcription factor (NAC117) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813332.10.0uncharacterized protein LOC112890695
SwissprotF4JN357e-65NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A2S3HMK80.0A0A2S3HMK8_9POAL; Uncharacterized protein
TrEMBLA0A2S3HN530.0A0A2S3HN53_9POAL; Uncharacterized protein
STRINGSi006105m1e-180(Setaria italica)
STRINGSb10g000101.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.37e-65NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]