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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J01055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 200aa MW: 21692.8 Da PI: 5.102 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.5 | 1.8e-11 | 76 | 154 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f +v+++s v k+ +lv+p + ++ +++ + +l +grsW ++ + k ++ + + W++F+ +n L++gD +vF+l+ Pahal.J01055.1 76 FTTVMSKSQVQKQFQLVIPARLHRHLP--EAR-VPAVL-LCRGRSWAASYCGDLKCKK--IDAAWRDFALDNALRVGDACVFELT 154 8899*****************985443..222.33444.459********66666555..8999*******************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-17 | 69 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-14 | 71 | 154 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.49E-14 | 74 | 177 | No hit | No description |
Pfam | PF02362 | 1.2E-9 | 76 | 155 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0083 | 76 | 179 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.166 | 76 | 179 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
METPGLKSQL IQMEIPGFPW KKHQPDPDGC TKLELQAGGI KPKVEPCEEQ ERSPPLPPPA 60 PDDWEVTPLS GDHPFFTTVM SKSQVQKQFQ LVIPARLHRH LPEARVPAVL LCRGRSWAAS 120 YCGDLKCKKI DAAWRDFALD NALRVGDACV FELTAAAAGS TGSEGDGEVV FRVQVLRGGL 180 PEEITSKGAT SDEPLVIVD* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811196.1 | 1e-145 | B3 domain-containing protein Os06g0112300-like isoform X1 | ||||
Swissprot | Q9LHY9 | 3e-45 | Y6112_ORYSJ; B3 domain-containing protein Os06g0112300 | ||||
TrEMBL | A0A2T8JF47 | 1e-134 | A0A2T8JF47_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db02470.1.p | 1e-101 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12046 | 19 | 33 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J01055.1 |
Publications ? help Back to Top | |||
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