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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J00772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 323aa MW: 35474.6 Da PI: 8.324 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.8 | 1.1e-32 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLH+rFveav+qLGG++ AtPk +l++m+v+gLt++hvkSHLQkYRl Pahal.J00772.1 45 RQRLRWTNELHDRFVEAVTQLGGPDSATPKGVLRIMGVPGLTIYHVKSHLQKYRL 99 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.136 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-32 | 44 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.55E-18 | 44 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.8E-26 | 46 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.7E-9 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.3E-10 | 131 | 152 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Pfam | PF14379 | 9.7E-9 | 172 | 196 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MYQPNLIYST GPTQSNPGVQ DLMGLGNGAM VPQNGGNNNP NMGARQRLRW TNELHDRFVE 60 AVTQLGGPDS ATPKGVLRIM GVPGLTIYHV KSHLQKYRLA KYIPDPSADD NKAEKKNPGD 120 LLAALEGSST MQISEALKLQ MEVQKRLHEQ LEKCRSRRNC HSTYINRQKT RVQRQLQLRI 180 EAQGKYLQKI IEEQQRITGA GASRATSSEQ LLDSERTNPS TPVPTSESPL QAVPFSKDNG 240 NLVEPIESAS HDELPHGEPQ TPDSNSRPGS PTLSPKHECP AKRQRGSSYG TPVADGDFAL 300 PHIFESSTGS EFQQCSMPYS SH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-22 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-22 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-22 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-22 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821585.1 | 0.0 | myb family transcription factor PHL7-like | ||||
Swissprot | Q9SJW0 | 3e-82 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2S3I291 | 0.0 | A0A2S3I291_9POAL; Uncharacterized protein | ||||
STRING | Si014152m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2220 | 38 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 8e-83 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J00772.1 |