PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00551.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 668aa    MW: 71875.5 Da    PI: 5.5585
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00551.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.23.7e-153431757
                    HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    ++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Pahal.J00551.1  3 SFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 43
                    68************************************995 PP
2START202.81.4e-631844051206
                     HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     ela +a++elv++a+++ep+W         e +n++e+ + f+++ +      ++ea+r+s vv+m++a+lve+l+d++ q+ + +     +a t
  Pahal.J00551.1 184 ELAVAAMEELVRMAQLDEPLWNAPGidgssETLNEEEYSRMFSRGLGpkqygLKSEASRDSSVVIMTHANLVEILMDVN-QYATVFSsivsRAVT 277
                     57899****************98767778899**********888779*******************************.88888888888**** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     lev+s+g      galq+m+ e+q++splvp R+++fvRy++q  +g+w++vdvS+ds ++ +    v +++++pSg+li++++ng+skvtwveh
  Pahal.J00551.1 278 LEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPGS----VLKCRRRPSGCLIQEMPNGYSKVTWVEH 368
                     *************************************************************97....8*************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     v++++r++h++++ lv+sgla+ga++wv tl+rqce+
  Pahal.J00551.1 369 VEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 405
                     ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.8E-5148IPR001356Homeobox domain
PROSITE profilePS5007114.754144IPR001356Homeobox domain
CDDcd000861.67E-13345No hitNo description
PfamPF000469.9E-13342IPR001356Homeobox domain
SuperFamilySSF466894.18E-13349IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-15352IPR009057Homeodomain-like
PROSITE patternPS0002701942IPR017970Homeobox, conserved site
PROSITE profilePS5084841.413175408IPR002913START domain
SuperFamilySSF559617.69E-36176407No hitNo description
CDDcd088757.92E-124179404No hitNo description
SMARTSM002342.0E-59184405IPR002913START domain
PfamPF018521.3E-52185405IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-5246401IPR023393START-like domain
SuperFamilySSF559617.99E-25426657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MASFFKECPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ MKNQHERQEN SQLRAENEKL  60
RAENMRYKEA LSSASCPNCG GPAALGEMSF DEHHLRIENA RLHEEIDRIS AIAAKYVGKP  120
MVSFPVLSSP LAAARASPLD IGVGAAAAYG GATDIFGGVV AAGAAGELLR GAAQSDADKP  180
MIVELAVAAM EELVRMAQLD EPLWNAPGID GSSETLNEEE YSRMFSRGLG PKQYGLKSEA  240
SRDSSVVIMT HANLVEILMD VNQYATVFSS IVSRAVTLEV LSTGVAGNYN GALQVMSVEF  300
QVPSPLVPTR ESYFVRYCKQ NADGTWAVVD VSLDSLRPGS VLKCRRRPSG CLIQEMPNGY  360
SKVTWVEHVE VDDRSVHNIY KLLVNSGLAF GARRWVGTLD RQCERLASVM ASNIPTSDIG  420
VITSSEGRKS MLKLAERMVM SFCGGVTASA AHQWTTLSGS GAEDVRVMTR KSVDDPGRPP  480
GIVLNAATSF WLPVPPKRVF DFLRDESSRS EWDILSNGGI VQEMAHIANG RDHGNCVSLL  540
RVNSTNSNQS NMLILQESCT DSSGSYVIYA PVDVVAMNVV LNGGDPDYVA LLPSGFAILP  600
DGPARGNMQG EGGVGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIA CTVERIKAAV  660
SGESNPQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672590.0BT067259.1 Zea mays full-length cDNA clone ZM_BFb0357I11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823505.10.0homeobox-leucine zipper protein ROC2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A270R5Z00.0A0A270R5Z0_9POAL; Uncharacterized protein
STRINGSi009409m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]