PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00202.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 604aa    MW: 62593.2 Da    PI: 7.5778
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00202.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30239298159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Pahal.J00202.1 239 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 298
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-32224298IPR003657WRKY domain
SuperFamilySSF1182902.09E-27232299IPR003657WRKY domain
PROSITE profilePS5081128.311234300IPR003657WRKY domain
SMARTSM007743.4E-37239299IPR003657WRKY domain
PfamPF031062.8E-27240298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MIKGVKQLGS HEERLTDKAC SPNPLERSQI DEASNQTSAI LKAQNKVEED KLASTRAEMG  60
EVREENKRLK TMLSRIVEDY RSLQLHFHDV LQQGQAKKLA EPATVAATDV EEPEFVSLSL  120
GTSTSTRKKE ENSSVSEGRG REDSMNTREG GLSLGLSDCK VGATNNAKIQ PEMLTLSPEG  180
SSEDAKDDAM EAADQQWPPS KTLKNLRSVG AEAEDDIGPL QQAKKTRVSV RARCDAPTMN  240
DGCQWRKYGQ KIAKGNPCPR AYYRCTVAAG CPVRKQVQRC ADDMSILITT YEGTHNHPLS  300
ASATAMASTT SAAASMLTSG SSTSLRFPSA SPAAAGLSFG FPSAHDAAAS KHFFLPNGGA  360
ASITSTPSYP TITLDLTSPP ATSQAFSLSS RFSSSSFGHG GARYPPTSFS FSTSGPSALS  420
GAAWPATGGA GYLSYGSPAS SLFNGGKLSS FEAALSSING RQQGGEVPAL HHQQQKASAS  480
GSAPAGVLTD TIAKAITSDP GFHTALAAAI TSYVGTQGGK SSAAGGDGGS QLQGLKWGQH  540
LGLGPPPSSA GAACSSALLA RSSPTTAAEE QGSNGHRSFL QPSLGLSSGS HSASTSPVEN  600
REQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-202393011778Probable WRKY transcription factor 4
2lex_A1e-202393011778Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811456.10.0probable WRKY transcription factor 72
TrEMBLA0A2S3HLX20.0A0A2S3HLX2_9POAL; Uncharacterized protein
STRINGPavir.Db02233.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-62WRKY DNA-binding protein 72