 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.I04453.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
LBD |
| Protein Properties |
Length: 242aa MW: 25535.6 Da PI: 6.7505 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.I04453.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 130.3 | 8.4e-41 | 61 | 160 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq+q ++lk++la
Pahal.I04453.1 61 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANELKVQLA 155
7********************************************************************************************** PP
DUF260 96 llkee 100
++++
Pahal.I04453.1 156 RAQAD 160
99875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MDYGSGSTGT GTTTTTTTTQ QQYSSCRSVS PPSRVSSCSP PPPPPAMQVV GNAPPTLVLS 60
PCAACKILRR RCADGCVLAP YFPPTEPAKF TTAHRVFGAS NIIKLLQDLP ESSRADAVSS 120
MVYEAEARLR DPVYGCAGAV CRLQKQANEL KVQLARAQAD LLNAQAQHAN LLALVCIEMA 180
NRRDSNHHQQ QHQPPSPPLM DGGGGGGGGG CSDFGAAAYQ AFYDSDMDSA TWPDHEAQLW 240
T*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU953937 | 1e-168 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |
