 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.I04414.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
Trihelix |
| Protein Properties |
Length: 190aa MW: 21154.1 Da PI: 11.6164 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.I04414.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 37.3 | 7.4e-12 | 15 | 88 | 2 | 69 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegek 69
W++ e+ +Li+a ++r r + l+ ++W++ ++++ + + f+r+ +qC+ +++ l+kryk++ +++
Pahal.I04414.1 15 WSDGETSTLIDAWGGAHQRRRPRGLRLKDWRAAASAVnahraaAGHRFNRTRVQCQTRIRTLKKRYKEELARQP 88
*****************************************99999*********************9876655 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 190 aa
Download sequence Send
to blast |
MPSRKPAPEC ASGNWSDGET STLIDAWGGA HQRRRPRGLR LKDWRAAASA VNAHRAAAGH 60
RFNRTRVQCQ TRIRTLKKRY KEELARQPPS GWPHLPRLRA FLAGPDGPPP GFPARRRRPS 120
SWSGLAASWT VPRRPRDAAA RSTGFCTAAV VTKLAEVYER VELARIGAEE EKMEMEVQQA 180
MLDVVKVEQ*
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G54390.1 | 2e-08 | sequence-specific DNA binding transcription factors |
