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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.I04356.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C3H |
| Protein Properties |
Length: 413aa MW: 43753.9 Da PI: 8.175 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.I04356.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 32.3 | 1.7e-10 | 343 | 367 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
ktelC+ + r G C+y +rC+FaHg+
Pahal.I04356.1 343 KTELCNKWER-GACPYDGRCRFAHGM 367
9*********.*************95 PP
|
| 2 | zf-CCCH | 19.5 | 1.8e-06 | 379 | 404 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt C+ fa+ C+yG rC+F H+
Pahal.I04356.1 379 YKTLACQLFAAASGCPYGHRCHFRHS 404
99*********************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 413 aa
Download sequence Send
to blast |
MKGGLRFLSP ARPSRVSSER GDGRGFGSPT WSSPLGTLLD SPSSCVSEGR ACEDGVSGFS 60
SPTWGSPLEK LFNTPSSGVS DDSRVGGNGS GFSSPTWGSP LETLFNSPSS CVSDIRGGGN 120
GSGSGIISTP KQASPLGMMF DSPSSCVSDS RGGGNGSGSV FSTPKHASPL ETLLNSPSSC 180
VSDNRGCGNS SSLRVSKERD GEVQKAEMLL RAITERYNGC FLHLRNATAE LADLRRERIR 240
LGAENLHLSH LLEELVVAEQ SNQASAVALT PSLKPVQAEA ASGCAPKSIS IRSKSFISPK 300
QPLREIQPQR LRVRASPAKE DTGGKEKDDG EVEMEAYGQG ALKTELCNKW ERGACPYDGR 360
CRFAHGMEEL RPVIRHPRYK TLACQLFAAA SGCPYGHRCH FRHSLPSTAE SC*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC118668 | 4e-80 | AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence. |
| GenBank | AC137267 | 4e-80 | AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence. |
| GenBank | AP014959 | 4e-80 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012611 | 4e-80 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
