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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pahal.I04344.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
MYB |
| Protein Properties |
Length: 368aa MW: 39169.1 Da PI: 5.3027 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.I04344.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgrWT+eEd +l+ +++++G g+W++ ++ g+ R++k+c++rw +yl
Pahal.I04344.1 14 RGRWTAEEDGILASYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
8*******************************99************97 PP
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| 2 | Myb_DNA-binding | 49.9 | 7.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ ++eE+ ++++++ lG++ W++Ia++++ gRt++++k++w+++l
Pahal.I04344.1 67 RGNISKEEEYVIIKLHATLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
7899******************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MGRAPCCEKV GLKRGRWTAE EDGILASYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60
LRADVKRGNI SKEEEYVIIK LHATLGNRWS LIASHLPGRT DNEIKNYWNS HLSRQIHTYR 120
RTYTAGPDAA ITIDMSKLHS ADKRRGGRTP GRSPKSAAAT ASGGGSKARS KQLPDRDKKP 180
EAAESGEEKG ASGPVAAAAA SAASSPRHSD GARSAVVDPD RNQPGSSSGV AGGGGTNTPE 240
GPWSEDATGP LVLDPTAMEF GGLWEAESEM EALLSSGGGI GPDHDPLTGF EAVCEAQVDD 300
LLDMDWDGFA AHLWGEPPAA AHQEQQNDDD RSTLLQPDEP QAAAAGCSNN QEDELESFAT 360
WLLSDSF*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ728395 | 1e-175 | KJ728395.1 Zea mays clone pUT6679 MYB transcription factor (MYB3) mRNA, partial cds. |
| GenBank | ZMU57002 | 1e-175 | U57002.1 Zea mays P protein (P) mRNA, complete cds. |
| Publications
? help Back to Top |
- Robbins ML,Sekhon RS,Meeley R,Chopra S
A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
Genetics, 2008. 178(4): p. 1859-74
[PMID:18430921] - Sidorenko L,Chandler V
RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
Genetics, 2008. 180(4): p. 1983-93
[PMID:18845841] - Robbins ML,Wang P,Sekhon RS,Chopra S
Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
PLoS ONE, 2009. 4(12): p. e8231
[PMID:20011605] - Rhee Y,Sekhon RS,Chopra S,Kaeppler S
Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
Genetics, 2010. 186(3): p. 843-55
[PMID:20823340] - Morohashi K, et al.
A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
Plant Cell, 2012. 24(7): p. 2745-64
[PMID:22822204]
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