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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I04038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 30046.4 Da PI: 4.6014 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.2e-18 | 96 | 145 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Pahal.I04038.1 96 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 145 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 19 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.0E-32 | 96 | 153 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.393 | 96 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-21 | 96 | 153 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-35 | 96 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-12 | 96 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.28E-30 | 97 | 153 | No hit | No description |
PRINTS | PR00367 | 1.5E-10 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MAKELRETSS SSATTTSSCT TSCCSSTVTD SSSSPPSPAA ANAAPAPRKR QAAEADAEAE 60 AEAEVGGEEE EEEFAGKTAA AAKKKRKRSS EGKHPTYRGV RMRAWGKWVS EIREPRKKSR 120 IWLGTFPTAE MAARAHDVAA LAIKGRAAHL NFPGLAGVLP RAASAAPKDV QAAAALAAAF 180 ESPSSPFSEP DAGAAPEPCH AQEDPAAENV AAAPEEAAAE AAVPPPTSQP ATPSSSVEEE 240 RHLFDLPDLL LDIRDGFGCF PPMWAPLPDV EEVNAELRLE EPLLWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-18 | 94 | 153 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 88 | KKRKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF314703 | 0.0 | KF314703.1 Setaria italica clone SiDREB hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796401.1 | 0.0 | ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q8LBQ7 | 2e-51 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A2S3INP4 | 0.0 | A0A2S3INP4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia02208.1.p | 2e-93 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 5e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I04038.1 |
Publications ? help Back to Top | |||
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