PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04038.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 287aa    MW: 30046.4 Da    PI: 4.6014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04038.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-1896145255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Pahal.I04038.1  96 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 145
                     69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576119No hitNo description
Gene3DG3DSA:3.30.730.107.0E-3296153IPR001471AP2/ERF domain
PROSITE profilePS5103223.39396153IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2196153IPR016177DNA-binding domain
SMARTSM003803.6E-3596159IPR001471AP2/ERF domain
PfamPF008472.6E-1296145IPR001471AP2/ERF domain
CDDcd000189.28E-3097153No hitNo description
PRINTSPR003671.5E-1097108IPR001471AP2/ERF domain
PRINTSPR003671.5E-10119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAKELRETSS SSATTTSSCT TSCCSSTVTD SSSSPPSPAA ANAAPAPRKR QAAEADAEAE  60
AEAEVGGEEE EEEFAGKTAA AAKKKRKRSS EGKHPTYRGV RMRAWGKWVS EIREPRKKSR  120
IWLGTFPTAE MAARAHDVAA LAIKGRAAHL NFPGLAGVLP RAASAAPKDV QAAAALAAAF  180
ESPSSPFSEP DAGAAPEPCH AQEDPAAENV AAAPEEAAAE AAVPPPTSQP ATPSSSVEEE  240
RHLFDLPDLL LDIRDGFGCF PPMWAPLPDV EEVNAELRLE EPLLWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-18941531272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3147030.0KF314703.1 Setaria italica clone SiDREB hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796401.10.0ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ72e-51ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2S3INP40.0A0A2S3INP4_9POAL; Uncharacterized protein
STRINGPavir.Ia02208.1.p2e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]