PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.I03991.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 545aa MW: 58658.2 Da PI: 11.8931

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I03991.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.6	2.8e-22	285	374	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+laLiea+r+++e+lr+g+l++++W++v++++ + +s +qC++k+e+l+kry++++ ++ +r+++ ++p+f l+ Pahal.I03991.1 285 CWTHEETLALIEAYRDRWEALRKGNLRAADWDDVANAVtarcgrFPTATPKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPLLH 374 8***********************************998888788899*********************98443..47**9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.9E-22	284	375	No hit	No description
SMART	SM00595	2.0E-5	293	377	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MPFPGGNNLS TRRNAGIWPT CGFIPHPSSK RSGASTCPRG QESSRAAPAD PDSPGRSGAA 60 TCDGRTITGL TAPTGLGGPD PHPPGRGPVP PRRGPTTVYR DPNTISHAGT ERAWARPPPP 120 ERTIKRRSGS PDRSAWPLTA SRGPNNRLRG WSWISERRGQ KIRPGTGGTG EERRGAAAAR 180 HPPNLHPSRS DTAHRHAARL RLRRRGRPRP PRHGLRTMRR RVTGCHHAPS GPPPPLPPSR 240 PHPSAARREA APVAAAAAAA AAAASSMGGM GLGGGASGRR LPPPCWTHEE TLALIEAYRD 300 RWEALRKGNL RAADWDDVAN AVTARCGRFP TATPKSGVQC RHKIEKLRKR YRAERSRSAG 360 RSKGPKWPFF PLLHDLAGGG VPDPSPNAIV KIKTKGPVPP ASTPSPVSSP SSEEAVRSRS 420 LHGLISNGGA GSGLRFTIPK ASRSRPAAVA AFNPERNHGE DDAESEAMAE VADALRAVGE 480 RFLRMEERRL ELSLQMEKER MESEMKRTQT MLDAQQLFLE AFLGKQQQHK KARLSPASRA 540 MEED*

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MPFPGGNNLS TRRNAGIWPT CGFIPHPSSK RSGASTCPRG QESSRAAPAD PDSPGRSGAA  60
TCDGRTITGL TAPTGLGGPD PHPPGRGPVP PRRGPTTVYR DPNTISHAGT ERAWARPPPP  120
ERTIKRRSGS PDRSAWPLTA SRGPNNRLRG WSWISERRGQ KIRPGTGGTG EERRGAAAAR  180
HPPNLHPSRS DTAHRHAARL RLRRRGRPRP PRHGLRTMRR RVTGCHHAPS GPPPPLPPSR  240
PHPSAARREA APVAAAAAAA AAAASSMGGM GLGGGASGRR LPPPCWTHEE TLALIEAYRD  300
RWEALRKGNL RAADWDDVAN AVTARCGRFP TATPKSGVQC RHKIEKLRKR YRAERSRSAG  360
RSKGPKWPFF PLLHDLAGGG VPDPSPNAIV KIKTKGPVPP ASTPSPVSSP SSEEAVRSRS  420
LHGLISNGGA GSGLRFTIPK ASRSRPAAVA AFNPERNHGE DDAESEAMAE VADALRAVGE  480
RFLRMEERRL ELSLQMEKER MESEMKRTQT MLDAQQLFLE AFLGKQQQHK KARLSPASRA  540
MEED*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	208	RLRLRRRGRPR
2	202	220	RRRGRPRPPRHGLRTMRRR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU959937	0.0	EU959937.1 Zea mays clone 220734 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Ia02237.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5689	32	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-22	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pahal.I03991.1