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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.I03744.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
WRKY |
Protein Properties |
Length: 455aa MW: 48615.5 Da PI: 6.6734 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.I03744.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 97 | 1.3e-30 | 216 | 274 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
Pahal.I03744.1 216 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 274
699************************998****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 455 aa
Download sequence Send
to blast |
MLDRSIPACQ FALLFVTLGI MCDFFWLSPA DQGDLSDVVR ASLQQQPPHL RLPATPAPTV 60 CSHGSLGSHL LEVEELLPLQ GRVNLGDDDH EAHLQPQRQL VHGNGGMGLM VGSNALYSQH 120 HPQAQGLAIP KLMSGQPQPP LCASSSRFAE REDDAANAPA VPEELGLDTT MAPHPHAPSI 180 KRRKNQTKKV VCIPAPVAPP PGVGGRPSTS GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR 240 CSSSKGCSAR KQVERSRTDP SMLVITYTSD HNHPWPTQRN ALAGSIRPAA SASSSSSAKS 300 HHHHQHRSSA AADAVPDPTP PHRHASNVAV ADNATTPAGS ITASVHHHQL LKQEVLDMDN 360 LEPALLDAAA AAADHDLGGM IADMDGALNV LCASNFHYSK KQQQHAPAGQ PEELPEEEDK 420 QLLLDRDPFS FSLLDWVGAS FGVGEAAANK DGYS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC018727 | 1e-80 | AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence. |
GenBank | AP014966 | 1e-80 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
GenBank | CP012618 | 1e-80 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
GenBank | KC954610 | 1e-80 | KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds. |