PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03470.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 314aa    MW: 34942.3 Da    PI: 6.7292
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62e-52171421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtd+elv +yL++k++g++l++  +i+evd+yk++PwdLp+++  +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v   
  Pahal.I03470.1  17 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERALFGTREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP- 109
                     79****************************.88***************8877899*************************************99. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g++ g+kk Lvfy g+ap+g+ktdW+mheyrl
  Pahal.I03470.1 110 RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 142
                     999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-6513169IPR003441NAC domain
PROSITE profilePS5100560.43117169IPR003441NAC domain
PfamPF023653.0E-2718142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGVPVRRERD AEAELNLPPG FRFHPTDDEL VEHYLCRKAA GQRLPVPIIA EVDLYKFDPW  60
DLPERALFGT REWYFFTPRD RKYPNGSRPN RAAGNGYWKA TGADKPVAPR GRTLGIKKAL  120
VFYAGKAPRG VKTDWIMHEY RLADAGRAAA AKKGSLRLDD WVLCRLYNKK NEWEKMRLGK  180
ESAAGAVAKE EAMDMTTSHS HSQSHSHSWG ETRTPESEIV DNDPFPELDS FPAFQDPAAA  240
MMVPKKEPHA DDGNNNAAKN SDLFVDLSYD DIQSMYSGLD MLPPPGEDFY SSLFASPRVK  300
GNQPAGAAGL APF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-11151753174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0170100.0KM017010.1 Miscanthus lutarioriparius NAC12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795053.10.0NAC domain-containing protein 2-like
SwissprotQ75HE51e-170NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBLA0A2S3IGT50.0A0A2S3IGT5_9POAL; Uncharacterized protein
TrEMBLA0A2T7BZ880.0A0A2T7BZ88_9POAL; Uncharacterized protein
STRINGPavir.Ia00158.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.15e-79NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Chen Q,Wang Q,Xiong L,Lou Z
    A structural view of the conserved domain of rice stress-responsive NAC1.
    Protein Cell, 2011. 2(1): p. 55-63
    [PMID:21337010]