 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.I03377.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 294aa MW: 32344.2 Da PI: 4.8927 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.I03377.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.2 | 6.6e-19 | 69 | 122 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k
Pahal.I03377.1 69 KKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWK 122
4557899**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 124.4 | 5.4e-40 | 68 | 160 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+++qv++LE+sFe ++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E++++aL++++dal++e ++L++++++L++e++e
Pahal.I03377.1 68 EKKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWKTKQIEREFAALRARHDALRAECDALRRDKDALAAEIRE 160
69**************************************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MKRPTTRGSS MVSQATTDQQ EDSCRYMERH GVDGDGTAAA ERDDVEAGAY DEEEDDEELA 60
GSRGGLGEKK RRLAADQVRA LERSFEVDNK LDPERKARIA RDLSLHPRQV AVWFQNRRAR 120
WKTKQIEREF AALRARHDAL RAECDALRRD KDALAAEIRE LREKVERQMD VKLESAEEML 180
PVAAGTAAAV ATVYKDGSTD SDSSAVFNEE ASPYSGAAFD HQHQHQPHPS FTGFTSFLAS 240
SSSLNSSFPS SLYHGVSHLD QEADGFLSAT AAHGFFADEQ GSGLGSWYGG EGW*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 116 | 124 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT042027 | 0.0 | BT042027.1 Zea mays full-length cDNA clone ZM_BFb0113G23 mRNA, complete cds. |
| GenBank | KJ727556 | 0.0 | KJ727556.1 Zea mays clone pUT5416 HB transcription factor (HB127) mRNA, partial cds. |
