PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I03350.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 31622.8 Da PI: 5.0537 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 29.4 | 2.4e-09 | 1 | 29 | 100 | 128 |
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+k +L fy+g+ap g++t Wvmhey++ Pahal.I03350.9 1 MGMKIILQFYEGHAPCGKRTGWVMHEYQV 29 59*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.714 | 1 | 50 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.18E-13 | 1 | 50 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGMKIILQFY EGHAPCGKRT GWVMHEYQVE QNDEANLPQD YKSLCRVFFQ GDKKLDDKSQ 60 QNSLNVDAPN DRLETYLQYL AKLEEPKVTA DANEEDVCSS KVQFEQKPLS ALDDIDVIAT 120 GDYIELNDLL TSEASASTSE NSSKRSMVSE DYFDSDAFLR EILKGSNTTD GLNQDHKFSI 180 AAPTKSANVV LSPSEQGLVQ FHDNNGMVPG TSHQKPVPEG DRGEHSRQGF QQQGPSMSSY 240 FPSSHVKPSH SNSSSSSQSS MKSHKEQSTS KFGMIGKKYC CFGSF* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797455.1 | 0.0 | NAC domain-containing protein 76-like isoform X3 | ||||
TrEMBL | A0A2S3INC8 | 0.0 | A0A2S3INC8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib03017.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 4e-10 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I03350.9 |