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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I03350.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 43250 Da PI: 4.8353 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.5 | 3.9e-17 | 22 | 131 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlskkgelvglk 103 +deelv ++L+++ ++++l+ +v+ +d v+P+ + + wy + d++ + + +++ r++k+gyWk+ + +v + + +g+k Pahal.I03350.4 22 SDEELV-RFLAERKAEDPLPQ-DVLVGLDFSLVDPRIFT------VDLWYLCWSDDQQPNnSAENSIRKAKNGYWKHVESC-KVPT-SIGIMGMK 106 79****.99999999999999.99************996......34576444444333314556678999*****98775.5555.5778**** PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 +L fy+g+ap g++t Wvmhey++ Pahal.I03350.4 107 IILQFYEGHAPCGKRTGWVMHEYQV 131 ***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-25 | 12 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.33 | 13 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-12 | 22 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MCPPNPELKL AALNISIRDS WSDEELVRFL AERKAEDPLP QDVLVGLDFS LVDPRIFTVD 60 LWYLCWSDDQ QPNNSAENSI RKAKNGYWKH VESCKVPTSI GIMGMKIILQ FYEGHAPCGK 120 RTGWVMHEYQ VEQNDEANLP QDYKSLCRVF FQGDKKLDDK SQQNSLNVDA PNDRLETYLQ 180 YLAKLEEPKV TADANEEDVC SSKVQFEQKP LSALDDIDVI ATGDYIELND LLTSEASAST 240 SENSSKRSMV SEDYFDSDAF LREILKGSNT TDGLNQDHKF SIAAPTKSAN VVLSPSEQGL 300 VQFHDNNGMV PGTSHQKPVP EGDRGEHSRQ GFQQQGPSMS SYFPSSHVKP SHSNSSSSSQ 360 SSMKSHKEQS TSKFGMIGKK YCCFGSF* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797455.1 | 0.0 | NAC domain-containing protein 76-like isoform X3 | ||||
TrEMBL | A0A2S3IMV3 | 0.0 | A0A2S3IMV3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8I320 | 0.0 | A0A2T8I320_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib03017.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 4e-16 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I03350.4 |