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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I03350.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 25975.5 Da PI: 5.1049 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 29.7 | 1.8e-09 | 1 | 29 | 100 | 128 |
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+k +L fy+g+ap g++t Wvmhey++ Pahal.I03350.3 1 MGMKIILQFYEGHAPCGKRTGWVMHEYQV 29 59*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 15.491 | 1 | 57 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-10 | 1 | 39 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGMKIILQFY EGHAPCGKRT GWVMHEYQVE QNDEANLPQV TADANEEDVC SSKVQFEQKP 60 LSALDDIDVI ATGDYIELND LLTSEASAST SENSSKRSMV SEDYFDSDAF LREILKGSNT 120 TDGLNQDHKF SIAAPTKSAN VVLSPSEQGL VQFHDNNGMV PGTSHQKPVP EGDRGEHSRQ 180 GFQQQGPSMS SYFPSSHVKP SHSNSSSSSQ SSMKSHKEQS TSKFGMIGKK YCCFGSF* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797458.1 | 1e-161 | NAC domain-containing protein 40-like isoform X5 | ||||
TrEMBL | A0A2S3IMW5 | 1e-174 | A0A2S3IMW5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib03017.1.p | 1e-137 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-08 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I03350.3 |