PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I03350.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 286aa MW: 31622.8 Da PI: 5.0537

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I03350.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	29.4	2.4e-09	1	29	100	128
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+k +L fy+g+ap g++t Wvmhey++ Pahal.I03350.2 1 MGMKIILQFYEGHAPCGKRTGWVMHEYQV 29 59*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.714	1	50	IPR003441	NAC domain
SuperFamily	SSF101941	1.18E-13	1	50	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MGMKIILQFY EGHAPCGKRT GWVMHEYQVE QNDEANLPQD YKSLCRVFFQ GDKKLDDKSQ 60 QNSLNVDAPN DRLETYLQYL AKLEEPKVTA DANEEDVCSS KVQFEQKPLS ALDDIDVIAT 120 GDYIELNDLL TSEASASTSE NSSKRSMVSE DYFDSDAFLR EILKGSNTTD GLNQDHKFSI 180 AAPTKSANVV LSPSEQGLVQ FHDNNGMVPG TSHQKPVPEG DRGEHSRQGF QQQGPSMSSY 240 FPSSHVKPSH SNSSSSSQSS MKSHKEQSTS KFGMIGKKYC CFGSF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797455.1	0.0	NAC domain-containing protein 76-like isoform X3
TrEMBL	A0A2S3INC8	0.0	A0A2S3INC8_9POAL; Uncharacterized protein
STRING	Pavir.Ib03017.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.1	4e-10	NAC domain containing protein 52

Link Out ? help Back to Top
Phytozome	Pahal.I03350.2