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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.I03031.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 281aa MW: 30561.2 Da PI: 6.375 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.I03031.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 60.9 | 2.8e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEd++lv +++q+G ++W++ +r g+ R++k+c++rw +yl
Pahal.I03031.1 14 RGAWSPEEDQRLVAYIRQHGHPNWRALPRQAGLLRCGKSCRLRWINYL 61
89******************************99************97 PP
|
2 | Myb_DNA-binding | 49.4 | 1.1e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++++E+ l+v+++++lG++ W++Ia+ ++ gRt++++k+ w+++
Pahal.I03031.1 67 RGNFSADEEALIVRLHRELGNR-WSAIAAQLP-GRTDNEIKNVWHTH 111
89********************.*********.***********987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MGRAPCCEKE GLRRGAWSPE EDQRLVAYIR QHGHPNWRAL PRQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF SADEEALIVR LHRELGNRWS AIAAQLPGRT DNEIKNVWHT HIKKRLEDDD 120 ADGDTSAAGR PKKQKARKSK PAAPKNKKQA AAKADNSETF MTASPGLSSS VSSGVTTFST 180 AAESTAAVSS GDNAATTSAS LQPGAAKAEM EMESFSSAEF PPIDESFWSS PDVVDMGLGA 240 MDDEELGLAG PPSSATRDED MEFWLKMLLE SGDMRDLSVL *
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT083768 | 1e-171 | BT083768.1 Zea mays full-length cDNA clone ZM_BFb0037L06 mRNA, complete cds. |
GenBank | KJ726898 | 1e-171 | KJ726898.1 Zea mays clone pUT3443 MYB transcription factor (MYB121) mRNA, partial cds. |