 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pahal.I02852.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
YABBY |
Protein Properties |
Length: 312aa MW: 32482.8 Da PI: 9.0173 |
Description |
YABBY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.I02852.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | YABBY | 78.9 | 1.5e-24 | 44 | 92 | 6 | 54 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas 54
+seq+Cyv+C fC+t+l+vsvP++slfk+vtvrCGhC+sll+vn++
Pahal.I02852.1 44 ASEQLCYVHCHFCDTVLVVSVPTSSLFKTVTVRCGHCSSLLTVNMRGLL 92
79****************************************9998655 PP
|
2 | YABBY | 130.5 | 2.2e-40 | 197 | 263 | 105 | 170 |
YABBY 105 edeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
Pahal.I02852.1 197 AKEPSPRANPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 263
567789998879*****************************************************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MSSSSSSSSA ASAAAVFPPS PPPLLVENLP PLHQLTPVAA APPASEQLCY VHCHFCDTVL 60 VVSVPTSSLF KTVTVRCGHC SSLLTVNMRG LLFPGTPTTN ASAAAAPADV TSTTTTITTP 120 PQPPPPASSV NNGQFHFPHS VNLAPNPPHQ SLLDEISSAN PSLQLLEQHG LGGLIPGGRN 180 AAAPPQPQPA AAGNKGAKEP SPRANPVVNR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI 240 SHREAFSAAA KNWAHFPHIH FGLMPDHQGL KKTSLLPQDH HQRKDALLKD GLYAAAAAAA 300 AAAANMGVAP Y*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | EU971153 | 0.0 | EU971153.1 Zea mays clone 358521 axial regulator YABBY1 mRNA, complete cds. |