PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02852.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 312aa    MW: 32482.8 Da    PI: 9.0173
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02852.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY78.91.5e-244492654
           YABBY  6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas 54
                    +seq+Cyv+C fC+t+l+vsvP++slfk+vtvrCGhC+sll+vn++   
  Pahal.I02852.1 44 ASEQLCYVHCHFCDTVLVVSVPTSSLFKTVTVRCGHCSSLLTVNMRGLL 92
                    79****************************************9998655 PP

2YABBY130.52.2e-40197263105170
           YABBY 105 edeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      +e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  Pahal.I02852.1 197 AKEPSPRANPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 263
                     567789998879*****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.8E-6344263IPR006780YABBY protein
SuperFamilySSF470957.2E-8202256IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.7E-4212255IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSSSSSSSSA ASAAAVFPPS PPPLLVENLP PLHQLTPVAA APPASEQLCY VHCHFCDTVL  60
VVSVPTSSLF KTVTVRCGHC SSLLTVNMRG LLFPGTPTTN ASAAAAPADV TSTTTTITTP  120
PQPPPPASSV NNGQFHFPHS VNLAPNPPHQ SLLDEISSAN PSLQLLEQHG LGGLIPGGRN  180
AAAPPQPQPA AAGNKGAKEP SPRANPVVNR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI  240
SHREAFSAAA KNWAHFPHIH FGLMPDHQGL KKTSLLPQDH HQRKDALLKD GLYAAAAAAA  300
AAAANMGVAP Y*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711530.0EU971153.1 Zea mays clone 358521 axial regulator YABBY1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796914.10.0protein YABBY 3-like
SwissprotQ8L5561e-103YAB3_ORYSJ; Protein YABBY 3
TrEMBLA0A2S3IKW50.0A0A2S3IKW5_9POAL; Uncharacterized protein
STRINGSi036788m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-42YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]