PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02802.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 802aa    MW: 83552 Da    PI: 6.5924
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02802.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.72.1e-30104188187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+++r+em+ ++r++ lk+plWe+vs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r  ++ +t+++f+qlea
  Pahal.I02802.3 104 RWPRQETLELLKIRSEMDAAFRDATLKGPLWEQVSRKLAEKGYTRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFSQLEA 188
                     8********************************************************************97..56668*******85 PP
2trihelix109.62e-34479564187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Pahal.I02802.3 479 RWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRMGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 564
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.2E-4101163IPR001005SANT/Myb domain
CDDcd122032.97E-28103168No hitNo description
PROSITE profilePS500906.737103161IPR017877Myb-like domain
PfamPF138374.5E-21103189No hitNo description
PRINTSPR012172.3E-9394410No hitNo description
PRINTSPR012172.3E-9414426No hitNo description
PRINTSPR012172.3E-9426447No hitNo description
SMARTSM007170.0093476538IPR001005SANT/Myb domain
CDDcd122033.90E-30478543No hitNo description
PROSITE profilePS500907.155478536IPR017877Myb-like domain
PfamPF138377.8E-24478565No hitNo description
Gene3DG3DSA:1.10.10.604.0E-4478535IPR009057Homeodomain-like
PRINTSPR012172.3E-9593618No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MQQQHGGGGG GGGGGGGGGG GGPAQQFGAQ QVEMPPPFSP AGGAGQRISL AEAPSPISSR  60
PPAPAQQYDE LGASSAGAGG FDAEGLAAAA AGEEGASGGS AGNRWPRQET LELLKIRSEM  120
DAAFRDATLK GPLWEQVSRK LAEKGYTRSA KKCKEKFENV HKYYKRTKES RAGRNDGKTY  180
RFFSQLEALH GTAGAGGPAP VASLVPPATS VGVSGAAGPS AVRVPAEPPP AVAAGAGMPT  240
MAFGNQMSFS TSNTEEYSDE EDSDDEGTQE LGGGADERGK RKRVSEGGGA ASGGRSGKMM  300
RFFEGLMKQV MERQEAMQQR FLEAIEKREQ DRMIREEAWR RQEMTRLARE QEILAQERAM  360
AASRDAAVLS FIQKITGQTI PMPSIAAPTI NAMPPPPHPK PPPPQPHPTA IASVSPAAPP  420
PAQQPPASQP PPAQQPQQQR SPIPATPQQS TDIVMTPAET PHADTPGYDG SGGGPTSSRW  480
PKAEVHALIQ LRSNLDTRYQ EAGPKGPLWE EISAGMRRMG YNRNAKRCKE KWENINKYFK  540
KVKESNKKRP EDSKTCPYFH QLDALYRNKA ALSSSGAGGG GPAVHASAPS TQPQETVTVT  600
AAAPISQTPP PPPPPTLPSQ SSQHAAKNGG SSNAAGSGNG NGGGVSNRGA SGGGSGGTQA  660
QASNGSVAAS RFFGEGGAGA GGSASAAKKP EDIMKEMMEQ RQPQPQAAVS GYNRIDGADS  720
DNMDEDEDDY DDDDDDDDVD GNKMQFEIQF QRQHQPPPQH QHQNVVRPNS GAGASNPPGT  780
NAPSTAAAAT TTAGSFLGMV Q*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794483.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025794484.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A2S3IKR80.0A0A2S3IKR8_9POAL; Uncharacterized protein
STRINGGRMZM2G414159_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-51Trihelix family protein