PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.I02617.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 748aa MW: 84455.5 Da PI: 6.8537

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02617.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	335.1	1.3e-102	369	739	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+avs ++++la+ +L+ ++e++s++gd +qRla++++ L+arl +++s+ly++l ++ + + l++++l v P+ + Pahal.I02617.1 369 LRTLLIHCAQAVSVSNHTLASDILNIIRENCSKSGDDTQRLASCLVDCLEARLDGTGSQLYRKLITKCRN---AVGLLKVFQLCLAVNPFQMAPY 460 6789********************************************************99988887...899*************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 N++Ile +g+ +vHiiDf+i G+QWp+L+++L++R++gpp++RiTg+++p++g ++ +tg+rLa++A+ ++vpfe++ +++++e+ Pahal.I02617.1 461 YFSNKTILEVSKGKPKVHIIDFGICFGFQWPSLFEQLTKREDGPPKVRITGIEQPHPGfrPDQMNTNTGHRLAEYASMFNVPFEYQG-ISSKWET 554 ****************************************************99988889999****************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+++++++++l++n+ +++++l de+vs++s+r++vL++++ ++Pkv+v+ + +++++ Fl+rf e +++ysalfd l++++pr++e+r+ Pahal.I02617.1 555 IRIEDFHIEEDDVLIINCLYRMEHLGDETVSMNSARNKVLNTIRMMKPKVFVHGVVNGSYSTPFFLTRFKEVMYHYSALFDILDKTVPRDNEARM 649 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er + +i nv+aceg++r+er e+++kW++r ++aG++++pl+ +++k + ++ ++++d v e++++l+lgWk+r L ++S W+ Pahal.I02617.1 650 ILERDIYLCSILNVIACEGSDRIERPESYKKWKSRNMRAGLEQLPLNPDIVKVTRDIVGQYHKD-CVVGEDDQWLLLGWKGRILKAISTWK 739 **********************************************************77.9**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.249	343	720	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-100	369	739	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MGSYKGLTFC KLQRSSAPPM EFNDKSSTNF EDFPSSMSST SGSYAPSQKF VDPANESNDL 60 ELFLHPPSST NYYPPVSSTS NDDGHITLNT SYSSKTYAPQ FCEVSSHVTP DWYGISVADS 120 SKSSWVNSDI TLNYINKLLM QEDNDDKVKL HHGECALRAM EEPFYRLLGQ NRPAYPLLPL 180 CSCDHLNNLD GCMNKSSGQS CSSCSAAIYP SNSHSNHNLQ AVEAPWSLSD VVKETKHFAQ 240 GTHSMGPGLD VDGLSIAEEP KRGKQVNVAD TRMHASSEVQ CENDLHTEDF CLLEGRSRKQ 300 LAVSFNGPTR DELFDRVLLF SEHKPMDEGI VLREKRTNKS THQKDQGRTS SARRMTRGKK 360 QQKKEVVDLR TLLIHCAQAV SVSNHTLASD ILNIIRENCS KSGDDTQRLA SCLVDCLEAR 420 LDGTGSQLYR KLITKCRNAV GLLKVFQLCL AVNPFQMAPY YFSNKTILEV SKGKPKVHII 480 DFGICFGFQW PSLFEQLTKR EDGPPKVRIT GIEQPHPGFR PDQMNTNTGH RLAEYASMFN 540 VPFEYQGISS KWETIRIEDF HIEEDDVLII NCLYRMEHLG DETVSMNSAR NKVLNTIRMM 600 KPKVFVHGVV NGSYSTPFFL TRFKEVMYHY SALFDILDKT VPRDNEARMI LERDIYLCSI 660 LNVIACEGSD RIERPESYKK WKSRNMRAGL EQLPLNPDIV KVTRDIVGQY HKDCVVGEDD 720 QWLLLGWKGR ILKAISTWKP NESYDGD*

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MGSYKGLTFC KLQRSSAPPM EFNDKSSTNF EDFPSSMSST SGSYAPSQKF VDPANESNDL  60
ELFLHPPSST NYYPPVSSTS NDDGHITLNT SYSSKTYAPQ FCEVSSHVTP DWYGISVADS  120
SKSSWVNSDI TLNYINKLLM QEDNDDKVKL HHGECALRAM EEPFYRLLGQ NRPAYPLLPL  180
CSCDHLNNLD GCMNKSSGQS CSSCSAAIYP SNSHSNHNLQ AVEAPWSLSD VVKETKHFAQ  240
GTHSMGPGLD VDGLSIAEEP KRGKQVNVAD TRMHASSEVQ CENDLHTEDF CLLEGRSRKQ  300
LAVSFNGPTR DELFDRVLLF SEHKPMDEGI VLREKRTNKS THQKDQGRTS SARRMTRGKK  360
QQKKEVVDLR TLLIHCAQAV SVSNHTLASD ILNIIRENCS KSGDDTQRLA SCLVDCLEAR  420
LDGTGSQLYR KLITKCRNAV GLLKVFQLCL AVNPFQMAPY YFSNKTILEV SKGKPKVHII  480
DFGICFGFQW PSLFEQLTKR EDGPPKVRIT GIEQPHPGFR PDQMNTNTGH RLAEYASMFN  540
VPFEYQGISS KWETIRIEDF HIEEDDVLII NCLYRMEHLG DETVSMNSAR NKVLNTIRMM  600
KPKVFVHGVV NGSYSTPFFL TRFKEVMYHY SALFDILDKT VPRDNEARMI LERDIYLCSI  660
LNVIACEGSD RIERPESYKK WKSRNMRAGL EQLPLNPDIV KVTRDIVGQY HKDCVVGEDD  720
QWLLLGWKGR ILKAISTWKP NESYDGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-39	373	739	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797095.1	0.0	scarecrow-like protein 9 isoform X1
TrEMBL	A0A2T8I1G6	0.0	A0A2T8I1G6_9POAL; Uncharacterized protein
STRING	Si040221m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-145	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pahal.I02617.1