PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.I02616.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 719aa MW: 81373.2 Da PI: 7.916

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02616.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	343.9	2.7e-105	340	710	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+avs ++++la+ +L+ +++ as +gd qRla++++ L+ rla+++s+ly++l +++ + + l++++l ++P+l+ h Pahal.I02616.1 340 LRTLLIHCAQAVSVNNHTLASDILSIIRQYASTSGDDSQRLAFCVADCLEVRLAGTGSQLYRKLMAKRRN---AVGILKVFHLCIAICPFLRAPH 431 6789********************************************************99999887...9999************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 N+++ + +g+ rvHiiDf+i G+QWp+L+++La+R++gpp++RiTg+++p++g +e+ + g+rLa++A+ +++pfe++ +++++e+ Pahal.I02616.1 432 YFSNKTVIDVSKGKPRVHIIDFGICFGFQWPSLFEQLAKREGGPPKVRITGIEQPQPGfrPNESSTNAGQRLADYASMFNIPFEYQG-ISSKWET 525 *******************************************************99**********************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++++++++++++l+Vn++++l++l de+vs++s+r++vL++++ l+Pkv+++ + +++++ Fl+rf e +++ysalfd ++++lp ++e+r+ Pahal.I02616.1 526 IKIDDFKIDKDDVLIVNCIYRLKNLGDETVSTNSARNRVLNTIRMLKPKVFIHGIVNGSYSTPFFLTRFKEVMYHYSALFDIIDKTLPWDDEARM 620 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er + e+ nv+aceg+er+er e+++kW+ r ++aGF+++pl+ +++k +++++++++d + ++e++++l+l Wk+r L+ + W+ Pahal.I02616.1 621 ILERDIYLSEVLNVIACEGSERIERPESYKKWKLRNKKAGFEQLPLNPDTVKGTRAMVKQYHKD-FVINEDDQWLLLRWKGRILYGIATWK 710 **********************************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.653	314	691	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-103	340	710	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence Send to blast
MANTPGCYAS SLKFMDPTNK YNDLDLLLHP TSSINHSPPV ATTVNNDGYV ASSASSSSKT 60 YAPQSCEVSS KLTPDWYGTN VAEYSEESWI NSDITLKYIN KLLMQEDSDE KFKSHHGESA 120 LRAMEEPLYR LIGQNYPANT QLLPVCSCDH PKTLDGSINK FHGQPCSSCS VAISSGNNHY 180 NDNLQAFEAP WSLSDIVGQT RQFTQDTYTT ELSLNVGGLS IVENNSRYNQ SLQINVGESR 240 KHALFEVQCR KMNLHKENHD LLLEGRSTKK FATSLNEPTR DEIFDKVLLC YEHEPVDQGI 300 VLQEAMSSRT TINSQTDQGR ISAQRNKKGK KQQRKEMVDL RTLLIHCAQA VSVNNHTLAS 360 DILSIIRQYA STSGDDSQRL AFCVADCLEV RLAGTGSQLY RKLMAKRRNA VGILKVFHLC 420 IAICPFLRAP HYFSNKTVID VSKGKPRVHI IDFGICFGFQ WPSLFEQLAK REGGPPKVRI 480 TGIEQPQPGF RPNESSTNAG QRLADYASMF NIPFEYQGIS SKWETIKIDD FKIDKDDVLI 540 VNCIYRLKNL GDETVSTNSA RNRVLNTIRM LKPKVFIHGI VNGSYSTPFF LTRFKEVMYH 600 YSALFDIIDK TLPWDDEARM ILERDIYLSE VLNVIACEGS ERIERPESYK KWKLRNKKAG 660 FEQLPLNPDT VKGTRAMVKQ YHKDFVINED DQWLLLRWKG RILYGIATWK PSESNNGD*

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence Send to blast

MANTPGCYAS SLKFMDPTNK YNDLDLLLHP TSSINHSPPV ATTVNNDGYV ASSASSSSKT  60
YAPQSCEVSS KLTPDWYGTN VAEYSEESWI NSDITLKYIN KLLMQEDSDE KFKSHHGESA  120
LRAMEEPLYR LIGQNYPANT QLLPVCSCDH PKTLDGSINK FHGQPCSSCS VAISSGNNHY  180
NDNLQAFEAP WSLSDIVGQT RQFTQDTYTT ELSLNVGGLS IVENNSRYNQ SLQINVGESR  240
KHALFEVQCR KMNLHKENHD LLLEGRSTKK FATSLNEPTR DEIFDKVLLC YEHEPVDQGI  300
VLQEAMSSRT TINSQTDQGR ISAQRNKKGK KQQRKEMVDL RTLLIHCAQA VSVNNHTLAS  360
DILSIIRQYA STSGDDSQRL AFCVADCLEV RLAGTGSQLY RKLMAKRRNA VGILKVFHLC  420
IAICPFLRAP HYFSNKTVID VSKGKPRVHI IDFGICFGFQ WPSLFEQLAK REGGPPKVRI  480
TGIEQPQPGF RPNESSTNAG QRLADYASMF NIPFEYQGIS SKWETIKIDD FKIDKDDVLI  540
VNCIYRLKNL GDETVSTNSA RNRVLNTIRM LKPKVFIHGI VNGSYSTPFF LTRFKEVMYH  600
YSALFDIIDK TLPWDDEARM ILERDIYLSE VLNVIACEGS ERIERPESYK KWKLRNKKAG  660
FEQLPLNPDT VKGTRAMVKQ YHKDFVINED DQWLLLRWKG RILYGIATWK PSESNNGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-42	344	710	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797096.1	0.0	scarecrow-like protein 9 isoform X2
TrEMBL	A0A2S3IKC1	0.0	A0A2S3IKC1_9POAL; Uncharacterized protein
STRING	Pavir.Ia01446.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-137	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pahal.I02616.1