![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.I02572.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 398aa MW: 42366.9 Da PI: 4.625 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.3e-19 | 57 | 106 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Pahal.I02572.1 57 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 106 789******.7*********33....35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.01E-30 | 56 | 113 | No hit | No description |
SuperFamily | SSF54171 | 2.81E-19 | 57 | 114 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-27 | 57 | 113 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.9E-14 | 57 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-35 | 57 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.599 | 57 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-8 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-8 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 398 aa Download sequence Send to blast |
MALKRKASPG LADDLMISCG GGRSHASSNT FAPAPASRES WAEAVGAVAA AQRGRKRFVG 60 VRQRPSGRWV AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGSNTR TNFWPRAAGA 120 AAPAAAVFTL QHPPPPSALP SKVTNLLLLR LKKARSSAGA VTLAQQEAPV QHRQAQQGYG 180 GQDEYSFQVD DFLSYDGASD ELQVVKHEVA SNCSQEAEDD GDEEVGGEED EAPLDFGFMD 240 KQPSPAREVD DAGPLYSPFE MVADELGCTA EVEPSGPINE VMKRMKYERK ISASLYALSG 300 VSECLRLRLG DGGDHVGAGR HELALSGLRD ACRKQQEQEV VDEGGNAVGH EESSSCSNSI 360 SSEAASSSPE AASSRQEAKA AESDMLLWSS LDLPPIC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 57 | 113 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727704 | 6e-88 | KJ727704.1 Zea mays clone pUT5643 AP2-EREBP transcription factor (EREB142) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796844.1 | 0.0 | uncharacterized protein LOC112876880 | ||||
TrEMBL | A0A2S3IK89 | 0.0 | A0A2S3IK89_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01300.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-22 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.I02572.1 |