PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02538.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 289aa    MW: 32607.6 Da    PI: 9.4135
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02538.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.23.8e-1030843083
                    ..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3 30 keesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
                    +++s+ +tl++ +++++W  k+  r+ s++ +l + W +Fv++n+++egD++++ 
  Pahal.I02538.3 30 PHRSTNVTLQTaSKSNKWHPKFYKRNASRKNMLMGQWLDFVRDNHVQEGDICLLF 84
                    4578899**996777*******77999999**********************875 PP
2B3491.1e-152162823299
                     --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                     +++t+ le   g++W+ ++ + +++++ +l +GW +F+++ngL++gD+++F l+++ ++ +++v+++++
  Pahal.I02538.3 216 SGQTVALEC-MGKTWKTQMVIHNGRRW-FLNGGWAKFARDNGLRVGDICLFDLKKNaRKLTMKVHIISR 282
                     455666555.89*******77777766.6999**********************999********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.198102IPR003340B3 DNA binding domain
CDDcd100172.66E-111497No hitNo description
SuperFamilySSF1019362.55E-1216101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1116101IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-83085IPR003340B3 DNA binding domain
PROSITE profilePS508639.84136102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-21177282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-18178281IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-17183281No hitNo description
SMARTSM010196.6E-5185283IPR003340B3 DNA binding domain
PfamPF023629.1E-14206282IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012226283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MFNPLDLFCG TPCSICYQGI SKEYSFPHFP HRSTNVTLQT ASKSNKWHPK FYKRNASRKN  60
MLMGQWLDFV RDNHVQEGDI CLLFPAEGGR RYTYTVYLLC ASATHSIGRA GFQIVCPCPS  120
RSSAKMASEV HIMEETTNDE SLDSEDSGGS SPPLYIVPCR NYLSKSQKKI VEERVRAIQS  180
EVPICVAVMK NNNVGDAQKW MLELGVRYAA VHLPASGQTV ALECMGKTWK TQMVIHNGRR  240
WFLNGGWAKF ARDNGLRVGD ICLFDLKKNA RKLTMKVHII SREQFSLK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797620.10.0B3 domain-containing protein Os03g0619800-like isoform X3
SwissprotQ6AV224e-77Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A2S3IK600.0A0A2S3IK60_9POAL; Uncharacterized protein
STRINGPavir.Ia01277.1.p1e-175(Panicum virgatum)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]