PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02537.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 621aa MW: 68877.6 Da PI: 9.5521

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02537.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.1	2e-10	431	511	16	96
EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 l + k++a +h + +s+ +tle ++++W k+ r+ s++ +l + W +Fv +n+++egD+v++ ++ ++ +++v v Pahal.I02537.1 431 LGITKEYALAHFPD--KSTSVTLEMpGKSKKWHPKFYKRNESRKNFLVGQWLDFVCDNHVQEGDIVLLLPTKGgRRSTFTVYV 511 66889999999756..4556777774577*****77999999********************99965433555556665 PP
2	B3	46.3	7.5e-15	546	617	27	99
---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 ++++++++tl+l+ g++We k+ + +++++ ++ +GW +F++ ngL++gD+++F+l+++ ++ ++ v ++rk Pahal.I02537.1 546 EEEPTTGQTLVLQC-GGKTWEAKMMFHNGRRW-FINGGWPNFARGNGLRVGDICLFELKKKeKKLTMAVYIIRK 617 56666777777655.9******99888877.5899********************888999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.221	416	515	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.2E-14	417	514	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.75E-15	418	512	No hit	No description
SuperFamily	SSF101936	1.43E-12	418	512	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.32	419	515	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-8	431	511	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0028	525	618	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-12	545	617	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.9E-14	548	617	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-13	551	617	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.10E-10	552	616	No hit	No description
PROSITE profile	PS50863	12.351	561	618	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
APPPQAPDEE SGPQKPPQVI WASGWAHVAR PFGPCKCAAP RLSELLRARR RFVILGSWKV 60 AAAVGGKHEW FCYECLQKQS EITCVRSLEK VPSERPPSHA HFGSIVHQPI TKRVESTRDA 120 GPWKNRKSKS FVTIYASLNK NYSSQKKRTK NNSNMRPMGN CTNRGRIDKI SAHTSAKASY 180 SCEIIETESA KSNNGNNQQV DHENPAELGN SVLEKPRGKS NSMKDSGGNH DNQTNQHASV 240 GCKNMEVKSV KDKETVVAAD QNKYGAVGSL RNSMDKSEVH GDSNSNSNII DGLMPEREKE 300 EVRFQLDYRA KCELPQRSMA ANVPQLPTLQ NDAVEKVTLY SPNDGCEEVF SCRGIKSIPS 360 VRERSVDSVD ISSISQHDTT EASESSVRFT EHQKGSSCRR GKTLEMAAAS SSSEESATMR 420 KTSVEPPGPY LGITKEYALA HFPDKSTSVT LEMPGKSKKW HPKFYKRNES RKNFLVGQWL 480 DFVCDNHVQE GDIVLLLPTK GGRRSTFTVY VLHETATHSR GGAGFQRVGS CPGGSTTKMA 540 SEVHIEEEPT TGQTLVLQCG GKTWEAKMMF HNGRRWFING GWPNFARGNG LRVGDICLFE 600 LKKKEKKLTM AVYIIRKEQF *

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

APPPQAPDEE SGPQKPPQVI WASGWAHVAR PFGPCKCAAP RLSELLRARR RFVILGSWKV  60
AAAVGGKHEW FCYECLQKQS EITCVRSLEK VPSERPPSHA HFGSIVHQPI TKRVESTRDA  120
GPWKNRKSKS FVTIYASLNK NYSSQKKRTK NNSNMRPMGN CTNRGRIDKI SAHTSAKASY  180
SCEIIETESA KSNNGNNQQV DHENPAELGN SVLEKPRGKS NSMKDSGGNH DNQTNQHASV  240
GCKNMEVKSV KDKETVVAAD QNKYGAVGSL RNSMDKSEVH GDSNSNSNII DGLMPEREKE  300
EVRFQLDYRA KCELPQRSMA ANVPQLPTLQ NDAVEKVTLY SPNDGCEEVF SCRGIKSIPS  360
VRERSVDSVD ISSISQHDTT EASESSVRFT EHQKGSSCRR GKTLEMAAAS SSSEESATMR  420
KTSVEPPGPY LGITKEYALA HFPDKSTSVT LEMPGKSKKW HPKFYKRNES RKNFLVGQWL  480
DFVCDNHVQE GDIVLLLPTK GGRRSTFTVY VLHETATHSR GGAGFQRVGS CPGGSTTKMA  540
SEVHIEEEPT TGQTLVLQCG GKTWEAKMMF HNGRRWFING GWPNFARGNG LRVGDICLFE  600
LKKKEKKLTM AVYIIRKEQF *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797622.1	0.0	B3 domain-containing protein Os03g0619800-like
TrEMBL	A0A3L6SFS4	0.0	A0A3L6SFS4_PANMI; Uncharacterized protein
STRING	Pavir.Ib03962.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Link Out ? help Back to Top
Phytozome	Pahal.I02537.1