PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02534.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 847aa    MW: 95386.9 Da    PI: 8.7402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02534.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.8e-16401221098
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++ +++p +f++++ g+   s  + +e+++g+++ vk+   k+ +++vl+ GW+ F  a+++ke+D+++F+++++s+f  +v +++
  Pahal.I02534.1  40 TSSKHDMTIPDRFMNHFRGE--LSESIEIESPDGNVYGVKV--IKHMDKIVLQCGWEVFIAAHHIKENDSLLFQHIENSRF--KVLILD 122
                     456677********777766..6678***************..*********************************99999..777766 PP
2B342.41.3e-13256335483
                     E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     +l+ps+v ++   lv+ +++a++h   k++   +tl+   ++++W+ k+ +rk + +y++ + W++Fv++n+++egD+++F+
  Pahal.I02534.1 256 ILKPSNVKSQyPSLVIRNDYAAAHFPHKNQ--FVTLQRpGKNKKWRPKFYIRKDRTAYMFFGHWSDFVHDNHVREGDICIFQ 335
                     67778887777679**********644444..6888884566*******88999999************************9 PP
3B353.25.5e-17389477694
                     ..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ++ d++++++l + k++a+e+  +g   e +tltl    ++  W+vk+   +++s++ +lt+GW+eFv++n+L++ D+++F+ +++++ +++ 
  Pahal.I02534.1 389 SNVDTNSTCILAFGKQYATEYlpDG---E-QTLTLLRkGKSMIWKVKMLPrSGSSRGQMLTGGWREFVHDNRLEVEDICLFQQMDDKRLTMTT 477
                     46678888*************5432...3.355555428889******664666666*************************77767666554 PP
4B3551.4e-176767571799
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                     v+ k++a +h    ++s+ +tle + g++W  +l +r ++++++l++ W +Fv++n+L+++D+++F+ + + ++f+++v+++r+
  Pahal.I02534.1 676 VIAKSYAVDHLP--QKSQIITLERPGGKKWHPRLHVRPQGRGFMLSTHWPNFVRDNRLRVNDVCLFQPITSeRGFRMMVHLLRE 757
                     789999999953..46779***************99*******************************88666********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-1929126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-1929126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.36531124IPR003340B3 DNA binding domain
CDDcd100175.12E-1633122No hitNo description
SMARTSM010191.1E-1034124IPR003340B3 DNA binding domain
PfamPF023621.7E-1440122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-18245335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-17248335IPR015300DNA-binding pseudobarrel domain
CDDcd100174.11E-16251334No hitNo description
SMARTSM010193.7E-4253357IPR003340B3 DNA binding domain
PROSITE profilePS5086310.137254358IPR003340B3 DNA binding domain
PfamPF023622.4E-11255335IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-19371496IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-18375487IPR015300DNA-binding pseudobarrel domain
CDDcd100173.92E-15380482No hitNo description
SMARTSM010192.8E-9382485IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828384485IPR003340B3 DNA binding domain
PfamPF023625.3E-15390479IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-17603625IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.096660758IPR003340B3 DNA binding domain
SMARTSM010191.5E-6663758IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-17676757IPR015300DNA-binding pseudobarrel domain
CDDcd100172.58E-17676756No hitNo description
SuperFamilySSF1019367.85E-18676758IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-16676757IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MARTRSASQT KKSCDCCKRY LDHLDGKNQK MNYFLRRVTT SSKHDMTIPD RFMNHFRGEL  60
SESIEIESPD GNVYGVKVIK HMDKIVLQCG WEVFIAAHHI KENDSLLFQH IENSRFKVLI  120
LDSDGCEKVF SCSGIKITTN AQERAAEYVD ISDTAHDYTK KLSGIRKRST SCQRITRNHR  180
RKAAKVASAA SSCEESGQDT EGTAGYESSF DFDDTETNPE PDYVLSRTSH LSAEEEEKVE  240
ELIEEIRPEI PVYVAILKPS NVKSQYPSLV IRNDYAAAHF PHKNQFVTLQ RPGKNKKWRP  300
KFYIRKDRTA YMFFGHWSDF VHDNHVREGD ICIFQPGPLE SDDSDQPSKY PYILSGHAHL  360
NCEQKKKVEE RVHIIQSGVP IYVAIMNNSN VDTNSTCILA FGKQYATEYL PDGEQTLTLL  420
RKGKSMIWKV KMLPRSGSSR GQMLTGGWRE FVHDNRLEVE DICLFQQMDD KRLTMTTMIQ  480
IFGSPCCGKD SSCAGTKSTS SVQEGSANSV PTLSGSHDHA TYSSASERPR GHRGSSSHRN  540
KMEKKAAASS LHEESGEGSL SGYESTESDH VKAFSEVNYV LSGRCYLTAE QQEKIAAIVK  600
KIQPEIPILV AQMKKSNIKR LSANLVTCTG LLGSSMPWKQ SLLLLVTASA EYMLDWISAS  660
LAFSFNLLNL VSIYQVIAKS YAVDHLPQKS QIITLERPGG KKWHPRLHVR PQGRGFMLST  720
HWPNFVRDNR LRVNDVCLFQ PITSERGFRM MVHLLRESRS RTPSLGRDAH GLSSHVKKEV  780
TSAVDAHEKS GRENNSLSSD RRKRRVMEEH HVLGSDSGGP SKPPLYVVLG GTCLEDRARE  840
SRGHQA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791593.10.0B3 domain-containing protein Os03g0620400-like
TrEMBLA0A3L6TV980.0A0A3L6TV98_PANMI; Uncharacterized protein
STRINGPavir.Ia01274.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-12B3 family protein