PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02533.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 177aa    MW: 19996.7 Da    PI: 8.289
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02533.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.5e-16897199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    ffkv+   +   ++r+++p kfa+++  k ++  +++l+  +g + +v +   +++++ vl++GW+ F + ++++  D +vF+++g+  f++ v vf
  Pahal.I02533.4  8 FFKVM---MGDFRSRMTIPDKFAQRFRDKIRG--KIKLKVYNGSTCTVVV--ARHRNKLVLEAGWEAFISTHDIRLADLLVFRYNGN--FQFEVLVF 95
                    67777...5556678********999766444..79999999********..*******************************9885..55588888 PP

                    -S CS
              B3 98 rk 99
                    + 
  Pahal.I02533.4 96 DP 97
                    75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-222100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-213100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.011598IPR003340B3 DNA binding domain
CDDcd100172.85E-18696No hitNo description
PfamPF023627.1E-13896IPR003340B3 DNA binding domain
SMARTSM010197.0E-8898IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDDRCKYFFK VMMGDFRSRM TIPDKFAQRF RDKIRGKIKL KVYNGSTCTV VVARHRNKLV  60
LEAGWEAFIS THDIRLADLL VFRYNGNFQF EVLVFDPSCC VKESSNVAQN CCDHVQVQQR  120
HRDLLDISSD SGDDQEPMQS SGSEDPTPAE KKGPNQSTKK TNTSSLTCHL NAPGLL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796316.11e-127putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_025796317.11e-127putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_025796318.11e-127putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_025796319.11e-127putative B3 domain-containing protein Os03g0621600 isoform X2
SwissprotQ851V52e-40Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2S3IK401e-127A0A2S3IK40_9POAL; Uncharacterized protein
STRINGPavir.Ib03968.1.p1e-102(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-15B3 family protein